RetrogeneDB ID:

retro_etel_2108

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_63024:11..578(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000006094
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:PCBP1
Ensembl ID:ENSETEG00000014741
Aliases:None
Description:poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647]


Retrocopy-Parental alignment summary:






>retro_etel_2108
AGGCAAGTAGTAAGCATCATAGAAACATAGGGGAGTCGGTTATGAGAATCCACGATGGAGAGTGGCGCGTAGATCAACAT
CTCGGAGGGGCACTGCCTCGAGAGAGTCATCAGCACGACCGGGCCCACCAATGCCATCTTTAAGGCTTTCACCATGATCA
TAGACAAGCTGGAGAAAGATATCATCAGCTCCATGTCCAATAGCACGGCGGCCAGCAGGACCCCGGTCACCCTGCGGCTG
GTGGTGCCGGCCACCCAGTGAGACTCCCTGATCGGGAAAGGAGGCTGTAAGATCAAGGAGATCCGCGAGAGCACGGGGGC
CCAGGTCCAGGTGGCGGGGAATATGCTGCCCAACTCGACCGAGCGCGCCATCACCATGGCGGGCGTGCCGCAGTCCGTCA
CCGAGTGTGTCAAGCAGATCTGCCTGGTCATGCTGGAGACGCTCTCCCAGTCTCCGCAAGGGCGAGTCATGACCATTCCG
TACCAGCCCATGCCGGCCAGCTCCCCGGTCATCTGCGCGGGCGGCCAAGATCGCTGCAGCGACGCGGCGGGCTACCCCCA
CGCCACC

ORF - retro_etel_2108 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.23 %
Parental protein coverage: 51.66 %
Number of stop codons detected: 4
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTA
..V.SII...G........ESGA.INISEG.C.ER.I...GPTNAIFKAF.MIIDKLE.DI.SSM.NSTA
RetrocopyRQVVSIIET*GSRL*ESTMESGA*INISEGHCLERVISTTGPTNAIFKAFTMIIDKLEKDIISSMSNSTA
ParentalASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITXXXXXXXIIECVKQI
ASR.PVTLRLVVPA.Q..SLIGKGGCKIKEIRESTGAQVQVAG.MLPNSTERAIT.........ECVKQI
RetrocopyASRTPVTLRLVVPATQ*DSLIGKGGCKIKEIRESTGAQVQVAGNMLPNSTERAITMAGVPQSVTECVKQI
ParentalCVVMLES---PPKG--VTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTT
C.VMLE.....P.G...TIPY.P.P.SSPVI.AGGQDR.S...D.A..PH.T
RetrocopyCLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCS---DAAGYPHAT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide