Parental gene:

ENSCJAG00000018590

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:42342947..42371270(+)


>ENSCJAG00000018590
ATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGGCTACTTATGCATGGAAAGGAAGTTGGCAG
TATCATCGGAAAGAAAGGAGAATCAGTTAAGAAGATGCGCGAAGAGAGTGGTGCACGTATCAACATCTCAGAAGGGAATT
GTCCTGAGAGAATTATCACTTTGGCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAA
GAGGACATAAGCAGCTCTATGACCAATAGCACAGCTGCCAGTAGACCCCCGGTCACCCTGAGGCTGGTGGTTCCTGCTAG
TCAGTGTGGCTCTCTCATTGGAAAAGGTGGTTGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTGGCAGGGG
ATATGTTACCCAACTCAACTGAGCGGGCCATCACTATTGCTGGCATTCCGCAATCCATCATTGAGTGTGTCAAACAGATC
TGCGTGGTCATGTTGGAGACTCTCTCCCAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTCCAGCTC
TCCAGTCATCTTTGCAGGTGGTCAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGATTTGACCAAGCTGC
ACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGACGCATGGCAACACCGGATTCAGTGGCATTGAATCCAGCTCTCCA
GAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCCGCTCAGACTACTTCTCATGAACTCACCATTCCAAACGATTTGAT
TGGCTGCATAATCGGGCGTCAGGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCGAACC
CAGTGGAAGGATCTACTGATAGGCAGGTTACCATCACTGGATCTGCTGCCAGCATTAGCCTGGCTCAATATCTAATCAAT
GTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 35 .92 RPM
SRP051959_skeletal_muscle 20 .22 RPM
SRP051959_lymph_node 28 .61 RPM
SRP051959_lung 30 .84 RPM
SRP051959_liver 26 .95 RPM
SRP051959_kidney 42 .11 RPM
SRP051959_heart 26 .68 RPM
SRP051959_colon 24 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020757 ortholog_one2one 1 retrogene
retro_btau_175,
Canis familiaris ENSCAFG00000006821 ortholog_one2one 1 retrogene
retro_cfam_54,
Callithrix jacchus ENSCJAG00000005783 within_species_paralog 1 retrogene
retro_cjac_577,
Cavia porcellus ENSCPOG00000000967 possible_ortholog 2 retrogenes
retro_cpor_193, retro_cpor_97,
Dasypus novemcinctus ENSDNOG00000008688 ortholog_one2one 6 retrogenes
retro_dnov_1146, retro_dnov_1399, retro_dnov_1672, retro_dnov_1823, retro_dnov_2434, retro_dnov_452,
Equus caballus ENSECAG00000022389 possible_ortholog 1 retrogene
retro_ecab_67,
Echinops telfairi ENSETEG00000014741 ortholog_one2one 3 retrogenes
retro_etel_1170, retro_etel_2108, retro_etel_840,
Homo sapiens ENSG00000197111 possible_ortholog 2 retrogenes
retro_hsap_4077, retro_hsap_83,
Gorilla gorilla ENSGGOG00000012613 ortholog_one2one 2 retrogenes
retro_ggor_212, retro_ggor_2734,
Macropus eugenii ENSMEUG00000001887 possible_ortholog 7 retrogenes
retro_meug_1143, retro_meug_1988, retro_meug_432, retro_meug_526, retro_meug_618, retro_meug_828, retro_meug_964,
Microcebus murinus ENSMICG00000011651 possible_ortholog 2 retrogenes
retro_mmur_1226, retro_mmur_1228,
Myotis lucifugus ENSMLUG00000009971 ortholog_one2one 3 retrogenes
retro_mluc_2199, retro_mluc_314, retro_mluc_571,
Macaca mulatta ENSMMUG00000006608 possible_ortholog 2 retrogenes
retro_mmul_1263, retro_mmul_1994,
Mus musculus ENSMUSG00000056851 ortholog_one2one 1 retrogene
retro_mmus_274,
Nomascus leucogenys ENSNLEG00000017693 ortholog_one2one 1 retrogene
retro_nleu_10,
Oryctolagus cuniculus ENSOCUG00000022490 possible_ortholog 3 retrogenes
retro_ocun_10, retro_ocun_1622, retro_ocun_898,
Pongo abelii ENSPPYG00000004581 ortholog_one2one 2 retrogenes
retro_pabe_3346, retro_pabe_92,
Pan troglodytes ENSPTRG00000005018 ortholog_one2one 1 retrogene
retro_ptro_113,
Pteropus vampyrus ENSPVAG00000012284 ortholog_one2one 3 retrogenes
retro_pvam_1168, retro_pvam_1369, retro_pvam_868,
Rattus norvegicus ENSRNOG00000036852 ortholog_one2one 2 retrogenes
retro_rnor_1238, retro_rnor_2088,
Sus scrofa ENSSSCG00000000274 ortholog_one2one 1 retrogene
retro_sscr_61,
Ictidomys tridecemlineatus ENSSTOG00000003635 ortholog_one2one 2 retrogenes
retro_itri_1522, retro_itri_557,
Vicugna pacos ENSVPAG00000000406 possible_ortholog 1 retrogene
retro_vpac_471,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_754 93.00 59.16
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2. retro_cjac_3253 97.48 100.00
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Download FASTA sequences of all ENSCJAG00000018590 retrocopies