Parental gene:

SDHC, ENSSSCG00000030318

Aliases:SDHC, CYBL
Description:Succinate dehydrogenase cytochrome b560 subunit, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:D0VWV4]
Organism:Pig (Sus scrofa)
Coordinates:4:96992134..97026507(-)


>ENSSSCG00000030318
ATGGCTGCGCTCTTGTTGAGACATGTTGGCCGTCATTGCCTCCGTGCCCATCTTAGTCCTCAGCTCTGTATCAGAAATGC
TGTTCCTTTGGGAACCACAGCCAAAGAAGAGATGGAGAGATTCTGGAATAAGAACCTTGGTTCAAACCGTCCTTTGTCTC
CCCATATCACTATCTACCGCTGGTCTCTTCCTATGGCGATGTCCATTTGCCACCGTGGCACTGGTATTGCTTTGAGTGCA
GGGGTCTCTCTTTTTGGCTTGTCTGCCCTCTTGCTCCCTGGGAACTTTGAATCTCATTTGGAACTTGTGAAGTCCCTGTG
TTTAGGGCCAACACTGATCTACACAGCCAAATTTGGGATTGTCTTCCCTCTCATGTATCACACCTGGAATGGGATCCGAC
ACTTGATTTGGGACCTAGGAAAAGGCCTGACGATTCCCCAGCTAACCCAGTCTGGAGTGGTTGTCTTGATTCTTACTGTG
TTGTCCTCTGTAGGGCTGGCAGCCATGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 21 .24 RPM
SRP014902_testis 47 .81 RPM
SRP018856_adipose 142 .44 RPM
SRP018288_kidney 436 .97 RPM
SRP018288_lung 28 .21 RPM
SRP018288_liver 181 .50 RPM
SRP018288_heart 158 .26 RPM
SRP035408_liver 273 .27 RPM
SRP035408_brain 95 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015351 ortholog_one2one 2 retrogenes
retro_amel_468, retro_amel_803,
Bos taurus ENSBTAG00000015853 ortholog_one2one 1 retrogene
retro_btau_835,
Canis familiaris ENSCAFG00000012992 ortholog_one2one 2 retrogenes
retro_cfam_1529, retro_cfam_275,
Callithrix jacchus ENSCJAG00000004757 ortholog_one2one 3 retrogenes
retro_cjac_1119, retro_cjac_2455, retro_cjac_988,
Echinops telfairi ENSETEG00000015767 ortholog_one2one 1 retrogene
retro_etel_675,
Felis catus ENSFCAG00000000499 ortholog_one2one 1 retrogene
retro_fcat_1609,
Homo sapiens ENSG00000143252 ortholog_one2one 4 retrogenes
retro_hsap_1794, retro_hsap_1896, retro_hsap_609, retro_hsap_854,
Gorilla gorilla ENSGGOG00000008017 ortholog_one2one 3 retrogenes
retro_ggor_1390, retro_ggor_536, retro_ggor_697,
Macaca mulatta ENSMMUG00000012411 ortholog_one2many 11 retrogenes
retro_mmul_1063, retro_mmul_1323, retro_mmul_1338, retro_mmul_1686, retro_mmul_1845, retro_mmul_2002, retro_mmul_2087, retro_mmul_239, retro_mmul_2416, retro_mmul_369, retro_mmul_672,
Mustela putorius furo ENSMPUG00000014439 ortholog_one2one 1 retrogene
retro_mputfur_1201,
Nomascus leucogenys ENSNLEG00000014367 ortholog_one2one 3 retrogenes
retro_nleu_1476, retro_nleu_420, retro_nleu_439,
Pan troglodytes ENSPTRG00000001585 ortholog_one2one 4 retrogenes
retro_ptro_1274, retro_ptro_2458, retro_ptro_449, retro_ptro_593,
Pteropus vampyrus ENSPVAG00000005544 ortholog_one2one 2 retrogenes
retro_pvam_879, retro_pvam_974,
Rattus norvegicus ENSRNOG00000003163 ortholog_one2one 2 retrogenes
retro_rnor_1486, retro_rnor_1487,
Sarcophilus harrisii ENSSHAG00000016835 ortholog_one2one 1 retrogene
retro_shar_205,
Takifugu rubripes ENSTRUG00000001873 ortholog_one2one 1 retrogene
retro_trub_41,
Tursiops truncatus ENSTTRG00000009234 ortholog_one2one 1 retrogene
retro_ttru_196,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1050 71.05 87.57
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2. retro_sscr_1061 68.28 84.62
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Download FASTA sequences of all ENSSSCG00000030318 retrocopies