Parental gene:

Sdhc, ENSRNOG00000003163

Aliases:None
Description:succinate dehydrogenase complex, subunit C [Source:RefSeq peptide;Acc:NP_001005534]
Organism:Rat (Rattus norvegicus)
Coordinates:13:94125548..94146440(-)


>ENSRNOG00000003163
ATGGCTGCGCTCTTGCTGAGACACATCGGCCGCCATTGCCTCCGAGCCCACCTTAGTTCTCAGCTCTGTATCAGAAATGC
TGCTCCTTTGGGAACCACAGCTAAGGAAGAAATGGCACGGTTCTGGAATAAGAACACGAGTTCCAACCGTCCTGTCTCTC
CCCATTTGACTATCTACAGGTGGTCTCTTCCCATGGCAATGTCTGTTTGCCACCGAGGCTCTGGGATAGCCATGAGTGGA
GGGGTCTCTCTTTTTGGCCTGTCGGCACTGCTGCTTCCTGGGAACTTTGAGTCGTATCTGATGCTTGTGAAGTCCCTGTG
TTTGGGGCCAGCGCTGATCCATGCAGCCAAGTTCGTGCTTGTCTTTCCTCTCATGTACCACTCATTGAATGGGGTCCGAC
ACTTGATGTGGGACCTAGGGAAAGGCCTGTCGATTTCCCAGGTCCAGTTGTCTGGAGTGACGGTCTTGGTTCTTGCAGTG
CTGTCCTCTGCAGGACTGGCAGCCATATGA

Library Parental gene expression (RPM)
SRP017611_liver 108 .05 RPM
SRP017611_kidney 370 .26 RPM
SRP017611_brain 85 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015351 ortholog_one2one 2 retrogenes
retro_amel_468, retro_amel_803,
Bos taurus ENSBTAG00000015853 ortholog_one2one 1 retrogene
retro_btau_835,
Canis familiaris ENSCAFG00000012992 ortholog_one2one 2 retrogenes
retro_cfam_1529, retro_cfam_275,
Callithrix jacchus ENSCJAG00000004757 ortholog_one2one 3 retrogenes
retro_cjac_1119, retro_cjac_2455, retro_cjac_988,
Echinops telfairi ENSETEG00000015767 ortholog_one2one 1 retrogene
retro_etel_675,
Felis catus ENSFCAG00000000499 ortholog_one2one 1 retrogene
retro_fcat_1609,
Homo sapiens ENSG00000143252 ortholog_one2one 4 retrogenes
retro_hsap_1794, retro_hsap_1896, retro_hsap_609, retro_hsap_854,
Gorilla gorilla ENSGGOG00000008017 ortholog_one2one 3 retrogenes
retro_ggor_1390, retro_ggor_536, retro_ggor_697,
Macaca mulatta ENSMMUG00000012411 ortholog_one2many 11 retrogenes
retro_mmul_1063, retro_mmul_1323, retro_mmul_1338, retro_mmul_1686, retro_mmul_1845, retro_mmul_2002, retro_mmul_2087, retro_mmul_239, retro_mmul_2416, retro_mmul_369, retro_mmul_672,
Mustela putorius furo ENSMPUG00000014439 ortholog_one2one 1 retrogene
retro_mputfur_1201,
Nomascus leucogenys ENSNLEG00000014367 ortholog_one2one 3 retrogenes
retro_nleu_1476, retro_nleu_420, retro_nleu_439,
Pan troglodytes ENSPTRG00000001585 ortholog_one2one 4 retrogenes
retro_ptro_1274, retro_ptro_2458, retro_ptro_449, retro_ptro_593,
Pteropus vampyrus ENSPVAG00000005544 ortholog_one2one 2 retrogenes
retro_pvam_879, retro_pvam_974,
Sarcophilus harrisii ENSSHAG00000016835 ortholog_one2one 1 retrogene
retro_shar_205,
Sus scrofa ENSSSCG00000030318 ortholog_one2one 2 retrogenes
retro_sscr_1050, retro_sscr_1061,
Takifugu rubripes ENSTRUG00000001873 ortholog_one2one 1 retrogene
retro_trub_41,
Tursiops truncatus ENSTTRG00000009234 ortholog_one2one 1 retrogene
retro_ttru_196,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1486 88.82 100.00
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2. retro_rnor_1487 87.50 89.35
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Download FASTA sequences of all ENSRNOG00000003163 retrocopies