Parental gene:

TKT, ENSSSCG00000021408

Aliases:None
Description:Sus scrofa transketolase (TKT), mRNA. [Source:RefSeq mRNA;Acc:NM_001112681]
Organism:Pig (Sus scrofa)
Coordinates:13:38418427..38447163(-)


>ENSSSCG00000021408
ATGGAGGCCTACCATAAGCCTGACCAGCAGAAGCTGCAGGCCCTGAAGGACACGGCCAACCGCCTGCGCATCAGCTCCAT
CCAGGCCACCACTGCGGCCGGCTCCGGCCACCCAACGTCATGCTGCAGTGCTGCCGAGATCATGGCTGTCCTCTTTTTCC
ACACCATGCGCTACAAGGCCCAGGATCCCCGGAACCCTCACAATGACCGCTTTGTGCTCTCCAAGGGCCACGCAGCACCT
ATCCTGTATTCCGTGTGGGCTGAAGCCGGCTTCCTGCCAGAGGCAGAGCTGCTGAACCTGAGGAAGATCAGCTCTGACCT
GGATGGGCACCCTGTCCCGAAACAAGCTTTCACTGATGTGGCCACCGGATCCCTGGGCCAGGGCCTTGGGGCCGCTTGTG
GGATGGCCTACACAGGCAAATACTTCGACAAAGCCAGCTACCGCGTCTATTGCTTGCTGGGAGACGGGGAGCTGTCAGAG
GGCGCCGTGTGGGAGGCTATGGCCTTCGCGGGCATCTACAAGCTGGACAACCTTGTCGCCATTCTTGACATCAACCGCCT
GGGCCAGAGCGACCCCGCCCCGCTGCAGCACCAGATGGATGTCTACCAGAAGCGCTGCGAGGCCTTTGGCTGGCACGCCA
TCATCGTGGACGGACACAGTGTGGAGGAGCTGTGCAAGGCCTTCGGGCAGGTCAAGAACCAGCCGACAGCCATCATCGCC
AAGACCTTCAAGGGCCGAGGCATCACAGGAGTAGAAGATAAGGAGTCTTGGCATGGGAAGCCCCTCCCCCAGAACATGGC
TGATCAGGTCATCCAGGAAATCTACAGCCAGATCCAGAACAAAAAGAAGATCCTGGCCACTCCACCGCAGGAAGACGCCC
CCTCAGTGGACATCACCAACATCCGAATGCCCACGCCACCCAGCTACAAAGTTGGGGACAAGATAGCTACCCGCAAGGCC
TACGGGCAGGCCCTGGCCAAGCTGGGCCACGCCAGTGACCGCATCATTGCCCTGGACGGGGACACCAAGAATTCCACCTT
CTCAGAGCTCTTCAAAAAGGAGCACCCAGACCGCTTCATTGAGTGCTACATCGCCGAGCAGAACATGGTGAGCATCGCCG
TGGGCTGCGCCACACGCAACAGGACAGTGCCCTTCTGCAGCACGTTCGCGGCCTTCTTCACACGGGCCTTCGACCAGATC
CGCATGGCGGCCATCTCCGAGAGCAACATCAACCTCTGCGGCTCCCACTGTGGCGTGTCCATCGGGGAAGATGGGCCCTC
CCAGATGGCCCTGGAAGACCTGGCCATGTTTCGGTCTGTCCCCATGTCAACTGTCTTTTACCCAAGCGATGGTGTGGCTA
CAGAGAAGGCAGTGGAATTAGCAGCCAATACAAAGGGTATCTGCTTTATCCGGACCAGCCGCCCAGAAAACGCCATCATC
TATAACAACAACGAAGATTTCCAAATTGGACAAGCCAAGGTGGTCCTGAAGAGCAAAGATGACCAGGTGACCGTGATCGG
GGCTGGGGTGACCCTGCATGAGGCCTTGGCCGCTGCTGACCTGCTCAAGAAAGAGAAGATCAACATCCGTGTGTTGGACC
CTTTCACCGTCAAGCCCCTGGACAGGAAGCTCATTCTCGACAGTGCCCGTGCTACCAAGGGCAGGATCCTCACCGTGGAG
GACCACTACTACGAAGGTGGCCTAGGTGAGGCAGTGGCTGCTGCAGTGGTGGGTGAGCCTGACGTCACTGTCACCCGCCT
GGCTGTCAGCCAAGTGCCAAGAAGCGGGAAGCCCGCGGAGCTGCTGAAGATGTTCGGCATCGACAAGGACGCCATCGCGC
GAGCCGTGCGGGGCCTGGTCACCAAGGCCTAG

Library Parental gene expression (RPM)
SRP014902_placenta 216 .75 RPM
SRP014902_testis 204 .39 RPM
SRP018856_adipose 487 .43 RPM
SRP018288_kidney 202 .03 RPM
SRP018288_lung 266 .58 RPM
SRP018288_liver 104 .42 RPM
SRP018288_heart 15 .11 RPM
SRP035408_liver 124 .64 RPM
SRP035408_brain 204 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003758 ortholog_one2one 1 retrogene
retro_btau_176,
Callithrix jacchus ENSCJAG00000007253 ortholog_one2one 1 retrogene
retro_cjac_2128,
Cavia porcellus ENSCPOG00000000072 ortholog_one2one 1 retrogene
retro_cpor_45,
Dipodomys ordii ENSDORG00000001392 ortholog_one2one 1 retrogene
retro_dord_329,
Homo sapiens ENSG00000163931 ortholog_one2one 1 retrogene
retro_hsap_47,
Macropus eugenii ENSMEUG00000005312 ortholog_one2one 3 retrogenes
retro_meug_1397, retro_meug_160, retro_meug_796,
Myotis lucifugus ENSMLUG00000000943 ortholog_one2one 1 retrogene
retro_mluc_67,
Macaca mulatta ENSMMUG00000014433 ortholog_one2one 1 retrogene
retro_mmul_74,
Mus musculus ENSMUSG00000021957 ortholog_one2one 1 retrogene
retro_mmus_220,
Oryctolagus cuniculus ENSOCUG00000015904 ortholog_one2one 2 retrogenes
retro_ocun_319, retro_ocun_62,
Otolemur garnettii ENSOGAG00000016911 ortholog_one2one 1 retrogene
retro_ogar_5,
Ochotona princeps ENSOPRG00000009891 ortholog_one2one 1 retrogene
retro_opri_10,
Pan troglodytes ENSPTRG00000015024 ortholog_one2one 1 retrogene
retro_ptro_126,
Pteropus vampyrus ENSPVAG00000016283 ortholog_one2one 1 retrogene
retro_pvam_352,
Rattus norvegicus ENSRNOG00000016064 ortholog_one2many 1 retrogene
retro_rnor_146,
Sarcophilus harrisii ENSSHAG00000017349 ortholog_one2one 1 retrogene
retro_shar_827,
Tupaia belangeri ENSTBEG00000012114 ortholog_one2one 1 retrogene
retro_tbel_3510,
Takifugu rubripes ENSTRUG00000003009 ortholog_one2many 1 retrogene
retro_trub_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_996 64.50 97.75
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000021408 retrocopies