RetrogeneDB ID: retro_mluc_67

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429768:24328374..24330255(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000017315
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: TKT
• Ensembl ID: ENSMLUG00000000943
• Aliases: None
• Description: None

Sequence

>retro_mluc_67
GCCGTGGCCGACGACCCCAAGCCCGACGCGGACACCGTGCAGGTGCTGCGGGACCTGGCCAACCGCCTGCGGATCCACTC
CATCCGGGCCACGTGCGCCTCCAGCTCCGGCCACCCCACGTCGTGCTGCAGCGCCGCCGAGATCATGTCGGTGCTCTTCT
TCCACACGATGCGGTACAAGCAGGCGGAGCCCGAACACCCGGACAACGACCGGTTCGTCCTCTCCAAGGGCCACGCCGCG
CCCATCCTCTACGCCGCCTGGGCGGAGGTGGGCGACATCAGCGAGGCGGACCTGCTGAGCCTGCGCAAGATCCACAGTGA
CCTGGAGGGGCATCCCACGCCGCGGCTGGCCTTCGTGGACGTGGCGACCGGGTCGCTGGGGCAGGGGCTGGGGGCCGCGT
GCGGCATGGCCTACACCGGCAAGTACTTCGACAAGGCCAGCTACCGCGTCTTCTGCCTCCTGGGCGACGGCGAGTCCTCC
GAGGGCTCCATCTGGGAGGCGCTGGCCTTCGCCTCCCACTACAGCCTGGACAACCTGGTGGCCGTCTTCGACGTGAACCG
CCTCGGGCAGAGCGGGCCCACGCCCCTGGAGCACTGCACCGACATGTACCAGAAGCGCTGCGAGGCCTTCGGCTGGACCA
CCTACCTGGTGGACGGCCACGACGTGGAGGCCCTGTGCCACGCCTTCTGGCAGGCGGCGCGGGTGAAGAACAAGCCCACG
GCCATCGTCTCCAAGACCTTCAAGGGCCGGGGCATCCCGAACGTGGAGGACGCCGAGAACTGGCACGGGAAGCCGATGCC
CAAGGAGAGAGCCGACGCCATCATCAAGCTGATTGAGAGCCAGATCCAGACCAACCGGAACCTGACGCCGAGGCCGCCCG
TGGAGGACTCGCCCCGCATCAGCATCAAGAACATCAAGATGGCCTCGCTGCCCGCTTACAAAGTGGGGGACAAGGTGGCG
ACCGACAGGGCCTACGGCTCGGCTCTGGCCAAACTGGGCCATGCCAATAAAAGGGTCATTGTCCTGGACGGGGACGCGAA
GAACGCCACCTTTTCCGAGATGTTCAAGAAGGAGCACCCCGAGCGTTTCATCGAGTGCTTCATGGCCGAGCAAAACATGG
TGAGCGTGGCGCTGGGCTGTGCCACGCGCGACCGCACCGTCGCTTTTGTCAGCACCTTCGCGGCCTATTTGACCCGAGCG
TTTGATCATATCCGGATGGGGGCCATCTCCCAAACCAACATCAACCTGGTTGGTTCCTACTGCGGGCTCTCCATTGGTGA
GGACGGACCCTCCCAGATGGCCCTGGAGGACCTAGCCATGTTCCGGAGCATCCCCAACTGCACTGTGTTCTACCCAAGCG
ATGCCGTCTCGACAGAGCACGCTGTATGCCTGGCCGCCAATGCCAAAGGCATGTGCTTCATTCGGACTGGCCCACCAGAA
ATTGCAGTTATTTACACCCCAGAAGAACATTTTGAGATTGGACAGGCCAAGGTCATCCGCCACAGTGCCAATGACAAAGT
CACAGTAATTGGAGCCGGGGTTACTCTGCATGAAGCCTTAGCAGCTGCTGACCGTCTTTCTGAACAAGATATTTCCATCC
GTGTCATTGACCCATTTACCATTAAACCCCTGGATGCTGCCACCATCATCTCCAATGCAAAAGCTACAGGCGGTCGGGTT
ATCACAGTGGAAGATCACTACCGGGAAGGTGGCATTGGAGAAGCAGTATGTGCCGCTGTGTCTGGGGAGCCTGACATCCT
TGTTCATCAGCTGGCAGTGTCAGGAGTCCCTCGAAGTGGGAAACCTTGCGAATTGCTGGATATGTTTGGAATCAGTGCCA
GACATATCATAGCAGCAGTGAAACACACTTTAATGAATTAA

Alignment

ORF - retro_mluc_67 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.81 %
• Parental protein coverage: 98.23 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KPDQQKLQALKDTAT-LRISSIQATTAAGCHSHPTSCCSAAEIMSVLFFHTMRYKSQDPRNAHNDRFVLS
          KPD....Q.L.D.A..LRI.SI.AT.A.....HPTSCCSAAEIMSVLFFHTMRYK...P....NDRFVLS
Retrocopy KPDADTVQVLRDLANRLRIHSIRATCASSS-GHPTSCCSAAEIMSVLFFHTMRYKQAEPEHPDNDRFVLS

Parental  KGHAAPILYAVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDK
          KGHAAPILYA.WAE.G...EA.LL.LRKI.SDL.GHP.P..AF.DVATGSLGQGLGAACGMAYTGKYFDK
Retrocopy KGHAAPILYAAWAEVGDISEADLLSLRKIHSDLEGHPTPRLAFVDVATGSLGQGLGAACGMAYTGKYFDK

Parental  ASYRVYCLLGDGELSEGSVWEAMAFAGIYKLDNLVAILDINRLGQSEPAPLQHQLDVYQKRCEAFGWHTV
          ASYRV.CLLGDGE.SEGS.WEA.AFA..Y.LDNLVA..D.NRLGQS.P.PL.H..D.YQKRCEAFGW.T.
Retrocopy ASYRVFCLLGDGESSEGSIWEALAFASHYSLDNLVAVFDVNRLGQSGPTPLEHCTDMYQKRCEAFGWTTY

Parental  IVNGHSVEELCKAFSQA---KHQPTAIIAKTFKGRGISGVEDKESWHGKPLPKNMADQVIQEIQSQIQSK
          .V.GH.VE.LC.AF.QA...K..PTAI..KTFKGRGI..VED.E.WHGKP.PK..AD..I..I.SQIQ..
Retrocopy LVDGHDVEALCHAFWQAARVKNKPTAIVSKTFKGRGIPNVEDAENWHGKPMPKERADAIIKLIESQIQTN

Parental  KKILATPPQEDAPSVDITNIRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSDLF
          ......PP.ED.P...I.NI.M...P.YKVGDK.AT..AYG.ALAKLGHA..R.I.LDGD.KN.TFS..F
Retrocopy RNLTPRPPVEDSPRISIKNIKMASLPAYKVGDKVATDRAYGSALAKLGHANKRVIVLDGDAKNATFSEMF

Parental  KKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFYTRAFDQIRMAAISESNINLCGSHCGVSI
          KKEHP.RFIEC..AEQNMVS.A.GCATR.RTV.F.STFAA..TRAFD.IRM.AIS..NINL.GS.CG.SI
Retrocopy KKEHPERFIECFMAEQNMVSVALGCATRDRTVAFVSTFAAYLTRAFDHIRMGAISQTNINLVGSYCGLSI

Parental  GEDGPSQMALEDLAMFRSVPMSTVFYPSDGVSTEKAVELAANTKGICFIRTSRPENAIIYSNNEDFQIGQ
          GEDGPSQMALEDLAMFRS.P..TVFYPSD.VSTE.AV.LAAN.KG.CFIRT..PE.A.IY...E.F.IGQ
Retrocopy GEDGPSQMALEDLAMFRSIPNCTVFYPSDAVSTEHAVCLAANAKGMCFIRTGPPEIAVIYTPEEHFEIGQ

Parental  AKVVLKSQDDQVTVIGAGVTLHEALAAADLLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVED
          AKV...S..D.VTVIGAGVTLHEALAAAD.L....I.IRV.DPFTIKPLD...I...A.AT.GR..TVED
Retrocopy AKVIRHSANDKVTVIGAGVTLHEALAAADRLSEQDISIRVIDPFTIKPLDAATIISNAKATGGRVITVED

Parental  HYYEGGIGEAVSSAVVGEPGVTVTRLAVSQVPRSGKPAELLKMFGIDKDAIVQAVK
          HY.EGGIGEAV..AV.GEP...V..LAVS.VPRSGKP.ELL.MFGI....I..AVK
Retrocopy HYREGGIGEAVCAAVSGEPDILVHQLAVSGVPRSGKPCELLDMFGISARHIIAAVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_67 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 19 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003758	1 retrocopy	retro_btau_176,
Callithrix jacchus	ENSCJAG00000007253	1 retrocopy	retro_cjac_2128,
Cavia porcellus	ENSCPOG00000000072	1 retrocopy	retro_cpor_45,
Dipodomys ordii	ENSDORG00000001392	1 retrocopy	retro_dord_329,
Homo sapiens	ENSG00000163931	1 retrocopy	retro_hsap_47,
Macropus eugenii	ENSMEUG00000005312	3 retrocopies	retro_meug_1397, retro_meug_160, retro_meug_796,
Myotis lucifugus	ENSMLUG00000000943	1 retrocopy	retro_mluc_67 ,
Macaca mulatta	ENSMMUG00000014433	1 retrocopy	retro_mmul_74,
Mus musculus	ENSMUSG00000021957	1 retrocopy	retro_mmus_220,
Oryctolagus cuniculus	ENSOCUG00000015904	2 retrocopies	retro_ocun_319, retro_ocun_62,
Otolemur garnettii	ENSOGAG00000016911	1 retrocopy	retro_ogar_5,
Ochotona princeps	ENSOPRG00000009891	1 retrocopy	retro_opri_10,
Pan troglodytes	ENSPTRG00000015024	1 retrocopy	retro_ptro_126,
Pteropus vampyrus	ENSPVAG00000016283	1 retrocopy	retro_pvam_352,
Rattus norvegicus	ENSRNOG00000016064	1 retrocopy	retro_rnor_146,
Sarcophilus harrisii	ENSSHAG00000017349	1 retrocopy	retro_shar_827,
Sus scrofa	ENSSSCG00000021408	1 retrocopy	retro_sscr_996,
Tupaia belangeri	ENSTBEG00000012114	1 retrocopy	retro_tbel_3510,
Takifugu rubripes	ENSTRUG00000003009	1 retrocopy	retro_trub_23,