Parental gene:

TKT, ENSCJAG00000007253

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:29024165..29041334(-)


>ENSCJAG00000007253
GTCTTCTCTCCTGGGTCAAGCCACCCTACGTCATGCTGCAGCGCTGCAGAGATCATGGCTGTCCTCTTTTTCCACACCAT
GCGCTACAAGTCCCAGGACCCCCGGAACCCGCACAACGACCGCTTTGTGCTCTCCAAGGGCCATGCAGCTCCCATCCTCT
ATGCGGTCTGGGCTGAAGCTGGCTTCCTGCCCGAGGCGGAGCTGCTGAACCTGAGGAAGATCAGCTCCGACTTGGACGGG
CACCCTGTCCCGAAACAAGCTTTCACCGATGTGGCCACTGGCTCCCTAGGCCAGGGCCTTGGGGCCGCATGTGGGATGGC
CTACACTGGCAAATACTTCGACAAGGCCAGCTACCGAGTCTATTGCTTGCTGGGAGATGGGGAGCTGTCAGAGGGCTCTG
TGTGGGAGGCCATGGCTTTCGCCAGCATCTACAAACTGGACAACCTCGTGGCCATTCTTGACATCAATCGCCTGGGCCAG
AGCGACCCGGCCCCGCTGCAGCACCAGATGGATATCTACCAGAAGCGATGCGAGGCCTTTGGTTGGCATGCCATCATCGT
GGATGGGCACAGCGTGGAGGAGCTATGCAAGGCCTTCGGCCAGGCCAAGCACCAGCCAACAGCCATCATTGCTAAGACCT
TCAAGGGCCGAGGGATCTCAGGGGTAGAAGATAAGGAGTCTTGGCATGGGAAGCCCCTCCCCAAAAACATGGCTGATCAG
ATCATCCAGGAGATCTACAGCCAGATCCAGAGCAAAAAGAAGATTCTGGCAACGCCCCCGCAGGAGGACGCCCCCTCGGT
GGACATTGCTAACATCCACATGCCCAGCCCGCCCAGCTACAAAGTTGGGGACAAGATCGCCACCCGCAAGGCCTACGGGC
AGGCATTGGCCAAGCTGGGCCATGCCAGCGACCGCATCATCGCCCTGGATGGGGACACCAAAAATTCCACCTTCTCGGAG
CTCTTCAAAAAGGAGCACCCGGACCGCTTCATTGAGTGCTACATTGCCGAGCAGAACATGGTGAGCATCGCAGTAGGCTG
TGCCACCCGCAGCAGGACGGTACCCTTCTGCAGCACCTTTGCAGCCTTCTTCACGCGAGCCTTTGACCAGATTCGCATGG
CCGCCATCTCCGAGAGCAACATCAACCTCTGCGGCTCCCACTGCGGCGTTTCTATCGGGGAAGATGGGCCCTCCCAGATG
GCCCTGGAAGATCTGGCCATGTTTCGGTCAGTCCCCATGTCAACTGTCTTTTACCCAAGTGATGGTGTTGCTACAGAGAA
GGCGGTGGAACTAGCCGCCAACACAAAGGGTATCTGCTTCATCCGAACCAGCCGCCCGGAAAACGCCATCATCTATAACA
ACAATGAGGACTTCCAGGTCGGACAAGCCAAGGTGGTCCTGAAGAGCAAGGATGACCAGGTGACCGTGATCGGGGCTGGG
GTGACCCTGCATGAGTCCTTGGCCGCTGCTGAGCTGCTGAAGAAAGAAAAGATCAACATCCGAGTGCTGGACCCCTTCAC
CATCAAGCCCCTGGACAGAAAACTCATTCTTGACAGCGCTCGTGCCACCAAGGGCAGGATCCTCACCGTGGAGGACCACT
ATTACGAAGGTGGCATTGGTGAGGCTGTGTCCACTGCAGTAGTGGGCGAGCCTGGCATCACTGTCACCCGCCTGGCCGTT
CACCGGGTACCAAGAAGTGGGAAGCCGGCTGAGCTGCTGAAGATGTTCGGTATCGACAAGGACGCCATTGCGCAAGCTGT
GAGGGGCCTCGTTGCCAAGGCCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 31 .01 RPM
SRP051959_skeletal_muscle 4 .96 RPM
SRP051959_lymph_node 23 .63 RPM
SRP051959_lung 27 .36 RPM
SRP051959_liver 103 .86 RPM
SRP051959_kidney 55 .71 RPM
SRP051959_heart 22 .56 RPM
SRP051959_colon 65 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003758 ortholog_one2one 1 retrogene
retro_btau_176,
Cavia porcellus ENSCPOG00000000072 ortholog_one2one 1 retrogene
retro_cpor_45,
Dipodomys ordii ENSDORG00000001392 ortholog_one2one 1 retrogene
retro_dord_329,
Homo sapiens ENSG00000163931 ortholog_one2one 1 retrogene
retro_hsap_47,
Macropus eugenii ENSMEUG00000005312 ortholog_one2one 3 retrogenes
retro_meug_1397, retro_meug_160, retro_meug_796,
Myotis lucifugus ENSMLUG00000000943 ortholog_one2one 1 retrogene
retro_mluc_67,
Macaca mulatta ENSMMUG00000014433 ortholog_one2one 1 retrogene
retro_mmul_74,
Mus musculus ENSMUSG00000021957 ortholog_one2one 1 retrogene
retro_mmus_220,
Oryctolagus cuniculus ENSOCUG00000015904 ortholog_one2one 2 retrogenes
retro_ocun_319, retro_ocun_62,
Otolemur garnettii ENSOGAG00000016911 ortholog_one2one 1 retrogene
retro_ogar_5,
Ochotona princeps ENSOPRG00000009891 ortholog_one2one 1 retrogene
retro_opri_10,
Pan troglodytes ENSPTRG00000015024 ortholog_one2one 1 retrogene
retro_ptro_126,
Pteropus vampyrus ENSPVAG00000016283 ortholog_one2one 1 retrogene
retro_pvam_352,
Rattus norvegicus ENSRNOG00000016064 ortholog_one2many 1 retrogene
retro_rnor_146,
Sarcophilus harrisii ENSSHAG00000017349 ortholog_one2one 1 retrogene
retro_shar_827,
Sus scrofa ENSSSCG00000021408 ortholog_one2one 1 retrogene
retro_sscr_996,
Tupaia belangeri ENSTBEG00000012114 ortholog_one2one 1 retrogene
retro_tbel_3510,
Takifugu rubripes ENSTRUG00000003009 ortholog_one2many 1 retrogene
retro_trub_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2128 66.06 83.33
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Download FASTA sequences of all ENSCJAG00000007253 retrocopies