Parental gene:

BECN1, ENSSSCG00000017386

Aliases:BECN1, ATG6
Description:beclin 1, autophagy related [Source:HGNC Symbol;Acc:1034]
Organism:Pig (Sus scrofa)
Coordinates:12:20256888..20268928(+)


>ENSSSCG00000017386
ATGGAGGGGTCTAAGACATCCAGCAGCACCATGCAGGTGAGCTTCGTGTGTCAGCGCTGCAGCCAGCCCCTGAAACTGGA
CACGAGCTTCAAGATCCTGGATCGTGTTACCATTCAGGAGCTTACAGCTCCATTACTTGCCACAGCCCAGGTGAAACCAG
GAGAGACCCAGGAGGAAGAGGCTAATCCAGGAGAGGAGCCATTTATTGAAACTCGCCAGGATGGTGTCTCTCGCAGATTC
ATCCCCCCAGCCAGGATGATGTCTACAGAAAGTGCCAACAGCTTCACTCTGATCGGGGAGGCATCCGATGGTGGCACCAT
GGAGAACCTCAGCCGAAGACTGAAGGTCACTGGGGATCTTTTTGACATCATGTCAGGCCAGACAGATGTGGATCACCCGC
TGTGTGAGGAATGCACAGATACTCTTTTAGACCAGCTGGACACTCAGCTCAATGTCACTGAAAATGAGTGTCAGAACTAC
AAACGCTGTTTGGAGATCTTAGAGCAAATGCATGAAGATGACAGCGAACAGCTCCGGATGGAGCTAAGGGAGCTGGCATT
AGAGGAAGAGAGGCTGATCCAGGAGTTGGAAGAGGTGGAAAAGAACCGTATTATAGTGGCAGAAAATCTCGAGAAGGTCC
AGGCCGAGGCTGAGAGGTTGGATCAGGAGGAAGCTCAGTATCAAAGGGAATACAGTGAATTTAAACGGCAACAGCTGGAG
CTGGATGATGAGCTGAAGAGTGTGGAAAACCAGATGCGTTATGCCCAGATGCAGCTGGACAAACTGAAGAAAACCAACGT
CTTTAATGCGACCTTCCACATTTGGCACAGTGGACAATTTGGCACAATCAATAACTTCAGGCTGGGTCGCCTGCCCAGTG
TTCCCGTGGAATGGAATGAGATTAATGCTGCCTGGGGCCAGACAGTGTTGCTGCTCCATGCCCTGGCCAATAAGATGGGC
CTGAAATTTCAGAGGTATCGACTTGTTCCCTATGGAAACCATTCATATCTGGAGTCTCTGACAGACAAATCTAAGGAGCT
GCCGTTGTACTGTTCTGGGGGGCTGCGGTTTTTCTGGGACAACAAGTTTGATCATGCGATGGTGGCTTTCCTGGACTGTG
TGCAGCAGTTCAAAGAAGAGGTTGAGAAAGGCGAGACACGTTTTTGTCTTCCTTACAGGATGGATGTGGAGAAAGGCAAG
ATTGAAGACACAGGAGGCAGTGGCGGCTCCTATTCCATCAAAACCCAGTTTAACTCTGAGGAACAGTGGACAAAAGCTCT
CAAGTTCATGCTGACGAATCTTAAGTGGGGTCTTGCTTGGGTATCCTCACAGTTTTATAACAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 28 .01 RPM
SRP014902_testis 29 .99 RPM
SRP018856_adipose 100 .00 RPM
SRP018288_kidney 73 .09 RPM
SRP018288_lung 65 .27 RPM
SRP018288_liver 27 .66 RPM
SRP018288_heart 45 .52 RPM
SRP035408_liver 36 .87 RPM
SRP035408_brain 114 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006867 ortholog_one2one 1 retrogene
retro_amel_16,
Bos taurus ENSBTAG00000019914 ortholog_one2one 1 retrogene
retro_btau_226,
Dipodomys ordii ENSDORG00000000956 ortholog_one2one 1 retrogene
retro_dord_675,
Felis catus ENSFCAG00000013136 ortholog_one2one 1 retrogene
retro_fcat_62,
Homo sapiens ENSG00000126581 ortholog_one2one 1 retrogene
retro_hsap_335,
Macropus eugenii ENSMEUG00000011700 ortholog_one2many 1 retrogene
retro_meug_600,
Macaca mulatta ENSMMUG00000029971 ortholog_one2one 1 retrogene
retro_mmul_81,
Monodelphis domestica ENSMODG00000015064 ortholog_one2many 1 retrogene
retro_mdom_1778,
Mus musculus ENSMUSG00000035086 ortholog_one2one 1 retrogene
retro_mmus_390,
Nomascus leucogenys ENSNLEG00000011840 ortholog_one2one 1 retrogene
retro_nleu_1776,
Oryctolagus cuniculus ENSOCUG00000015964 ortholog_one2one 3 retrogenes
retro_ocun_1021, retro_ocun_1732, retro_ocun_218,
Procavia capensis ENSPCAG00000014049 ortholog_one2one 1 retrogene
retro_pcap_345,
Pan troglodytes ENSPTRG00000022819 ortholog_one2one 1 retrogene
retro_ptro_268,
Sorex araneus ENSSARG00000000367 ortholog_one2one 1 retrogene
retro_sara_136,
Ictidomys tridecemlineatus ENSSTOG00000012612 ortholog_one2one 1 retrogene
retro_itri_25,
Tursiops truncatus ENSTTRG00000011716 ortholog_one2one 1 retrogene
retro_ttru_595,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_75 54.13 91.96
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Download FASTA sequences of all ENSSSCG00000017386 retrocopies