Parental gene: | BECN1, ENSOCUG00000015964 |
| Aliases: | None |
| Description: | beclin 1, autophagy related [Source:HGNC Symbol;Acc:1034] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 19:43518104..43531158(-) |
>ENSOCUG00000015964
ATGGAGGGGTCCAAGACGCCCAGCAGCACCATGCAGGTGAGCTTCGTGTGCCAGCGCTGCAGCCAGCCCCTCAAGCTGGA
CACGAGCTTCAAGATCCTGGACCGGGTCACCATCCAGGAGCTCACAGCTCCATTACTTGCCACAGCCCAGGTCAAACCAG
GAGACCCCCAGGAGGAAGAGGCTAACTCAGGAGAGGAAGCATTTATTGAAACTCGCCAGGATGGTGTCTCTCGCAGATTC
ATCCCCCCAGCCAGGATGATGTCTACAGAAAGTGCCAACAGCTTCACTCTGATCGGGGAGGCGTCCGACGGCGGCACCAT
GGAGAACCTCAGCCGAAGACTGAAGGTCACTGGGGACCTTTTTGACATCATGTCGGGCCAGACAGACGTGGATCACCCAC
TGTGTGAGGAATGCACGGATACTCTCTTAGACCAGCTGGACACTCAGCTCCATGTCACCGAAAATGAGTGTCAGAACTAC
AAGCGCTGTTTGGAGATCTTGGAGCAGATGAACGAGGATGACAGTGAGCAGCTGCAGAAGGAGCTGAGGGAGCTGGCCCT
GGAGGAGGAAAGGCTGGTCCAGGAACTGGAAGACGTGGAAAAGAACCGCAGAACGGTGGCAGAAAGCCTGGAGAAGGTCC
AGGCTGAGGCTGAGCGGCTGGATCAGGAGGAAGCTCAGTATCAGAGAGAATACAGTGAATTTAAACGACAACAGCTGGAG
CTGGACGACGAGCTGAAAAGTGTGGAAAACCAGATGCGTTATGCCCAGATGCAGCTGGACAAGCTGAAGAAGACCAACGT
CTTCAACGCGACCTTCCATATCTGGCACAGTGGACAGTTTGGCACAATCAATAACTTCAGGCTGGGCCGCCTGCCCAGTG
TTCCTGTGGAATGGAATGAGATTAATGCTGCTTGGGGCCAGACAGTGTTGCTGCTTCATGCCCTGGCCAATAAGATGGGT
CTGAAATTTCAGAGGTATCGACTGGTGCCCTATGGAAATCACTCGTATCTGGAGTCTCTGACAGACAAATCTAAGGAGCT
GCCATTATACTGTTCTGGGGGGTTGCGGTTTTTCTGGGACAACAAGTTTGACCATGCAATGGTGGCTTTCCTGGACTGCG
TGCAGCAATTTAAAGAAGAGGTTGAAAAGGGCGAGACACGTTTTTGTCTTCCGTACAGGATGGATGTGGAGAAAGGCAAG
ATTGAAGACACAGGAGGCAGTGGCGGCTCCTATTCCATCAAAACCCAGTTCAATTCTGAGGAACAGTGGACAAAAGCTGC
TTGGGTATCCTCACAATTTTATAACAAATGA
ATGGAGGGGTCCAAGACGCCCAGCAGCACCATGCAGGTGAGCTTCGTGTGCCAGCGCTGCAGCCAGCCCCTCAAGCTGGA
CACGAGCTTCAAGATCCTGGACCGGGTCACCATCCAGGAGCTCACAGCTCCATTACTTGCCACAGCCCAGGTCAAACCAG
GAGACCCCCAGGAGGAAGAGGCTAACTCAGGAGAGGAAGCATTTATTGAAACTCGCCAGGATGGTGTCTCTCGCAGATTC
ATCCCCCCAGCCAGGATGATGTCTACAGAAAGTGCCAACAGCTTCACTCTGATCGGGGAGGCGTCCGACGGCGGCACCAT
GGAGAACCTCAGCCGAAGACTGAAGGTCACTGGGGACCTTTTTGACATCATGTCGGGCCAGACAGACGTGGATCACCCAC
TGTGTGAGGAATGCACGGATACTCTCTTAGACCAGCTGGACACTCAGCTCCATGTCACCGAAAATGAGTGTCAGAACTAC
AAGCGCTGTTTGGAGATCTTGGAGCAGATGAACGAGGATGACAGTGAGCAGCTGCAGAAGGAGCTGAGGGAGCTGGCCCT
GGAGGAGGAAAGGCTGGTCCAGGAACTGGAAGACGTGGAAAAGAACCGCAGAACGGTGGCAGAAAGCCTGGAGAAGGTCC
AGGCTGAGGCTGAGCGGCTGGATCAGGAGGAAGCTCAGTATCAGAGAGAATACAGTGAATTTAAACGACAACAGCTGGAG
CTGGACGACGAGCTGAAAAGTGTGGAAAACCAGATGCGTTATGCCCAGATGCAGCTGGACAAGCTGAAGAAGACCAACGT
CTTCAACGCGACCTTCCATATCTGGCACAGTGGACAGTTTGGCACAATCAATAACTTCAGGCTGGGCCGCCTGCCCAGTG
TTCCTGTGGAATGGAATGAGATTAATGCTGCTTGGGGCCAGACAGTGTTGCTGCTTCATGCCCTGGCCAATAAGATGGGT
CTGAAATTTCAGAGGTATCGACTGGTGCCCTATGGAAATCACTCGTATCTGGAGTCTCTGACAGACAAATCTAAGGAGCT
GCCATTATACTGTTCTGGGGGGTTGCGGTTTTTCTGGGACAACAAGTTTGACCATGCAATGGTGGCTTTCCTGGACTGCG
TGCAGCAATTTAAAGAAGAGGTTGAAAAGGGCGAGACACGTTTTTGTCTTCCGTACAGGATGGATGTGGAGAAAGGCAAG
ATTGAAGACACAGGAGGCAGTGGCGGCTCCTATTCCATCAAAACCCAGTTCAATTCTGAGGAACAGTGGACAAAAGCTGC
TTGGGTATCCTCACAATTTTATAACAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 24 .12 RPM |
| SRP017611_kidney | 49 .77 RPM |
| SRP017611_brain | 43 .65 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006867 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000019914 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000000956 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000013136 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000126581 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000011700 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000029971 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000015064 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000035086 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011840 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000014049 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000022819 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000000367 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000017386 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012612 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011716 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_218 | 51.57 | 87.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1021 | 73.97 | 55.28 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1732 | 95.63 | 52.52 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000015964 retrocopies