Parental gene:

ALDH2, ENSSSCG00000009889

Aliases:None
Description:Sus scrofa aldehyde dehydrogenase 2 family (mitochondrial) (ALDH2), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001044611]
Organism:Pig (Sus scrofa)
Coordinates:14:42378890..42409687(-)


>ENSSSCG00000009889
ATGTTGCGCCCTGCTGCGCTTGCCGCCGCCCGCCTCGTGCTCCGCCAGGGCCGCCGCCTATTATCGGCCGCCCCTACCCA
GGCGGTGCCGGCCCCCAACCAGCAGCCCGAGATCTTCTACAACCAGATCTTCATAAACAATGAGTGGCATGATGCTATCA
GCAAGAAAACTTTCCCTACCGTCAATCCATCCACTGGGGATGTCATCTGTCATGTAGCTGAAGGAGACAAGGAAGATGTG
GACAGGGCAGTGGAAGCTGCCCGGGCTGCATTCCAGCTGGGCTCACCCTGGCGTCGCCTGGATGCATCTGACAGGGGCCG
GCTGCTGAACCGCCTGGCCGATTTGATTGAGCGGGACCGGACCTACCTAGCGGCACTGGAGACCCTGGACAACGGCAAGC
CCTATGTCATCTCTTACCTGGTAGATTTGGACATGGTCCTCAAGTGTCTCCGTTACTATGCTGGCTGGGCTGATAAGTAC
CATGGTAAAACCCTTCCCATCGACGGGGACTACTTCAGCTACACTCGCCATGAGCCTGTGGGAGTGTGTGGGCAGATCAT
CCCGTGGAACTTCCCGCTCTTGATGCAAGCGTGGAAACTGGGCCCAGCCTTGGCGACTGGAAACGTGGTTGTGATGAAGG
TTTCTGAGCAGACTCCACTCACTGCCCTCTATGTGGCCAACTTGATTAAGGAGGCCGGCTTTCCTCCTGGCGTGGTCAAT
ATTGTTCCTGGATATGGCCCAACAGCCGGGGCTGCCATCGCCTCTCATGAGGATGTGGACAAAGTGGCCTTCACAGGCTC
CACTGAGGTTGGCCACCTCATCCAGGTTGCTGCAGGGAAGAGTAACCTCAAGAGAGTGACCCTGGAGCTAGGAGGAAAGA
GCCCCAATATCATCATGTCAGATGCTGATATGGACTGGGCTGTGGAGCAGGCCCACTTCGCCCTGTTCTTCAACCAGGGC
CAGTGCTGCTGTGCGGGCTCCCGGACCTTTGTGCAGGAGGACATTTATGCTGAGTTTGTGGAGCGGAGTGTTGCCCGGGC
CAGGTCTCGTGTGGTGGGGAACCCTTTTGACAGCCGGACTGAGCAGGGGCCGCAGATAGATGAAACTCAGTTTAAGAAGA
TTCTTGGCTACATCAAGTCTGGGAAGGAGGAAGGGGCGAAACTGCTCTGCGGTGGAGGGGCGGCTGCTGACCGTGGCTAC
TTCATCCAGCCCACCGTGTTTGGAGATGTGCAAGATGGCATGACCATTGCAAAGGAGGAGATCTTTGGGCCAGTGATGCA
GATTCTCAAGTTCAAGACCATAGAGGAAGTCATTGGGAGAGCCAACAATTCCAAGTACGGGCTGGCCGCAGCTGTCTTCA
CAAAGGACTTAGACAAGGCCAATTATCTGTCTCAAGCCCTTCAGGCTGGCACCGTGTGGGTCAACTGCTATGACGTGTTT
GGGGCCCAGTCACCGTTTGGTGGCTACAAACTGTCTGGGAGTGGCCGGGAGCTGGGAGAGTATGGGCTGCAGGCATACAC
GGAAGTAAAAACTGTCACAGTCAAAGTTCCTCAGAAGAACTCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 152 .11 RPM
SRP014902_testis 46 .25 RPM
SRP018856_adipose 160 .93 RPM
SRP018288_kidney 556 .06 RPM
SRP018288_lung 95 .00 RPM
SRP018288_liver 1003 .91 RPM
SRP018288_heart 4 .51 RPM
SRP035408_liver 422 .87 RPM
SRP035408_brain 44 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013664 ortholog_one2many 1 retrogene
retro_amel_51,
Bos taurus ENSBTAG00000008743 ortholog_one2one 1 retrogene
retro_btau_48,
Canis familiaris ENSCAFG00000008683 ortholog_one2many 1 retrogene
retro_cfam_1493,
Equus caballus ENSECAG00000017673 ortholog_one2one 2 retrogenes
retro_ecab_1054, retro_ecab_1061,
Felis catus ENSFCAG00000022000 ortholog_one2one 1 retrogene
retro_fcat_1590,
Homo sapiens ENSG00000111275 ortholog_one2many 1 retrogene
retro_hsap_19,
Gorilla gorilla ENSGGOG00000007108 ortholog_one2one 1 retrogene
retro_ggor_33,
Latimeria chalumnae ENSLACG00000011798 ortholog_one2one 1 retrogene
retro_lcha_108,
Microcebus murinus ENSMICG00000003487 ortholog_one2one 1 retrogene
retro_mmur_19,
Myotis lucifugus ENSMLUG00000017084 ortholog_one2one 1 retrogene
retro_mluc_1918,
Macaca mulatta ENSMMUG00000008336 ortholog_one2one 1 retrogene
retro_mmul_247,
Mustela putorius furo ENSMPUG00000002282 ortholog_one2one 1 retrogene
retro_mputfur_27,
Mus musculus ENSMUSG00000029455 ortholog_one2one 1 retrogene
retro_mmus_222,
Nomascus leucogenys ENSNLEG00000000016 ortholog_one2one 1 retrogene
retro_nleu_22,
Otolemur garnettii ENSOGAG00000033093 ortholog_one2one 1 retrogene
retro_ogar_203,
Pongo abelii ENSPPYG00000004966 ortholog_one2one 1 retrogene
retro_pabe_32,
Pteropus vampyrus ENSPVAG00000013189 ortholog_one2one 1 retrogene
retro_pvam_163,
Rattus norvegicus ENSRNOG00000001344 ortholog_one2one 1 retrogene
retro_rnor_307,
Ictidomys tridecemlineatus ENSSTOG00000015009 ortholog_one2one 1 retrogene
retro_itri_33,
Xenopus tropicalis ENSXETG00000020930 ortholog_one2one 1 retrogene
retro_xtro_12,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_9 74.49 94.82
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Download FASTA sequences of all ENSSSCG00000009889 retrocopies