Parental gene:

ENSCAFG00000008683

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:26:9319231..9356259(+)


>ENSCAFG00000008683
ATGTTGCGCGCCGCCGCGCTCGCTGCCGCCGGCCTCCGGCCCCGCCTGGGCCGCCGCCTCCTGTCGGCCGCCTCCTCCCA
GGCCGTGCCGGCCCCCAACCAGCAGCCCGAGGTCTTCTACAACCAGATCTTCATAAACAATGAGTGGCACGATGCTGTTA
GCAAGAAAACGTTCCCCACCATCAATCCATCCACTGGAGAAGTCATCTGTCAGGTAGCTGAAGGAGATAAGGAAGATGTG
GACAAGGCAGTAAAGGCTGCCCGGGCTGCCTTCCAGCTAGGTTCACCCTGGCGCCGCATGGACGCATCTGACAGAGGCCG
CTTGCTGAACCGCCTGGCAGATCTGATTGAGCGAGACCGGACCTATCTGGCAGCCTTGGAGACCCTGGATAATGGCAAGC
CCTATGTCATCTCTTACCTTGTGGATCTGGACATGGTCCTCAGATGCCTCCGTTACTATGCTGGCTGGGCTGATAAGTAC
CATGGGAAAACCATTCCTATCGATGGGGACTTTTTCAGTTATACCCGCCATGAACCTGTCGGGGTGTGCGGGCAGATCAT
TCCATGGAACTTCCCCCTCCTGATGCAAGCCTGGAAACTGGGCCCAGCTCTGGCGACCGGAAATGTGATTGTGATGAAGG
TAGCTGAGCAGACTCCACTCACTGCCCTGTATGTGGCCAACCTGATTAAGGAGGCTGGCTTTCCTCCTGGCGTGGTCAAT
ATTATTCCTGGATTTGGCCCCACAGCTGGGGCTGCCATCGCCTCCCACGAGGATGTGGACAAAGTGGCCTTCACAGGCTC
CACCGAGGTTGGCCACCTAGTCCAGGTTGCTGCAGGGAACAGTAACCTCAAGAGAGTGACCCTGGAGCTGGGAGGAAAGA
GCCCCAATATCATCATGTCAGATGCAGACATGAACTGGGCCGTAGAGCAGGCCCACTTTGCCCTGTTCTTCAACCAGGGC
CAGTGCTGCTGTGCCGGCTCCCGGACCTTTGTGCAAGAAGATGTTTATGCTGAGTTTGTGGAGCGGAGTGTTGCCAGGGC
CAAGTCACGTGTAGTTGGGAACCCCTTTGACAGCCAGACTGAGCAGGGGCCACAGGTGGATGAAACTCAGTTTAAGAAGA
TCCTTGGTTATATCAAATCTGGGAAGGAGGAGGGGGCGAAACTATTGTGTGGTGGAGGGGCGGCTGCTGACCGAGGCTAC
TTTATCCAGCCCACCGTGTTTGGAGATGTACAAGACACCATGACTATCGCCAAGGAGGAGATCTTTGGGCCAGTGATGCA
GATCCTGAAGTTCAAGACCATAGAGGAAGTTATTGGGAGAGCCAATAATTCCAAGTATGGGCTGGCTGCAGCTGTCTTCA
CCAAGGACTTGGACAAAGCCAATTATCTGTCCCAAGCCCTCCAGGCTGGCACTGTGTGGATCAACTGCTATGATGTATTT
GGGGCCCAGTCACCATTCGGTGGCTACAAGATGTCTGGGAGTGGCCGGGAGCTGGGAGAGTATGGGTTGCAGGCATACAC
GGAAGTGAAAACTGTCACGATCAAAGTGCCTCAGAAGAACTCCTAA

Library Parental gene expression (RPM)
SRP017611_brain 167 .28 RPM
SRP017611_kidney 622 .00 RPM
SRP017611_liver 326 .75 RPM
SRP012049_cerebellum 229 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013664 ortholog_many2many 1 retrogene
retro_amel_51,
Bos taurus ENSBTAG00000008743 ortholog_one2many 1 retrogene
retro_btau_48,
Equus caballus ENSECAG00000017673 ortholog_one2many 2 retrogenes
retro_ecab_1054, retro_ecab_1061,
Felis catus ENSFCAG00000022000 ortholog_one2many 1 retrogene
retro_fcat_1590,
Homo sapiens ENSG00000111275 ortholog_many2many 1 retrogene
retro_hsap_19,
Gorilla gorilla ENSGGOG00000007108 ortholog_one2many 1 retrogene
retro_ggor_33,
Latimeria chalumnae ENSLACG00000011798 ortholog_one2many 1 retrogene
retro_lcha_108,
Microcebus murinus ENSMICG00000003487 ortholog_one2many 1 retrogene
retro_mmur_19,
Myotis lucifugus ENSMLUG00000017084 ortholog_one2many 1 retrogene
retro_mluc_1918,
Macaca mulatta ENSMMUG00000008336 ortholog_one2many 1 retrogene
retro_mmul_247,
Mustela putorius furo ENSMPUG00000002282 ortholog_one2many 1 retrogene
retro_mputfur_27,
Mus musculus ENSMUSG00000029455 ortholog_one2many 1 retrogene
retro_mmus_222,
Nomascus leucogenys ENSNLEG00000000016 ortholog_one2many 1 retrogene
retro_nleu_22,
Otolemur garnettii ENSOGAG00000033093 ortholog_one2many 1 retrogene
retro_ogar_203,
Pongo abelii ENSPPYG00000004966 ortholog_one2many 1 retrogene
retro_pabe_32,
Pteropus vampyrus ENSPVAG00000013189 ortholog_one2many 1 retrogene
retro_pvam_163,
Rattus norvegicus ENSRNOG00000001344 ortholog_one2many 1 retrogene
retro_rnor_307,
Sus scrofa ENSSSCG00000009889 ortholog_one2many 1 retrogene
retro_sscr_9,
Ictidomys tridecemlineatus ENSSTOG00000015009 ortholog_one2many 1 retrogene
retro_itri_33,
Xenopus tropicalis ENSXETG00000020930 ortholog_one2many 1 retrogene
retro_xtro_12,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1493 87.98 74.09
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Download FASTA sequences of all ENSCAFG00000008683 retrocopies