Parental gene: | ENSECAG00000017673 |
| Aliases: | None |
| Description: | None |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 8:20441639..20473005(-) |
>ENSECAG00000017673
TCGGCGCCACCCAGGGCGTGCCGGCTCCCAAACCAGCAGCCCGAGGTCTTCTACAACCAGATCTTCATAAACAATGAGTG
GCACGACGCTGTCAGCAAGAAAACATTCCCCACCGTCAATCCGTCTACTGGGGAAGTCATCTGTCAGGTAGCAGCAGGCG
ACAAGGAAGATGTGGACAGGGCAGTGAAGGCTGCCCGGGCTGCCTTTCAGCTGGGCTCGCCCTGGCGCCGCATGGATGCA
TCTGACAGGGGCCGGCTGCTGAACCGCTTGGCTGATCTGATTGAACGGGACCGGACCTACCTGGCAGCCTTGGAGACCCT
GGATAATGGCAAGCCCTACGTCATCTCTTACCTGGTGGATTTGGACATGGTCCTCAAATGTCTCCGTTATTATGCTGGCT
GGGCCGATAAGTACCATGGGAAAACCATTCCCATCGATGGGGACTTCTTCAGCTACACCCGCCATGAACCTGTGGGGGTG
TGTGGGCAGATCATTCCGTGGAACTTCCCACTCTTGATGCAAGCATGGAAACTGGGCCCAGCCTTGGCGACTGGAAACGT
GGTTGTGATGAAGGTGGCCGAGCAGACTCCACTCACTGCCCTCTATGTGGCCAACTTGACTAAGGAGGCTGGCTTTCCCC
CTGGCGTGGTCAATGTTGTTCCTGGATTTGGCCCCACGGCTGGGGCTGCCATTGCCTCCCATGAGGATGTGGACAAAGTA
GCTTTCACAGGCTCCACTGAGGTTGGCCACCTAATCCAGGTTGCTGCAGGGAGGAGTAACCTCAAGAAAGTGACCCTGGA
GCTGGGAGGAAAAAGCCCTAACATCATCATGTCAGATGCTGACATGGACTGGGCGGTGGAGCAGGCCCACTTCGCCCTGT
TCTTCAACCAGGGCCAGTGCTGCTGTGCGGGCTCCCGGACCTTTGTGCAGGAGGATGTTTACGCTGAGTTTGTGGAGCGC
AGCGTTGCCCGGGCCCGGTCTCGTGTGGTTGGGAACCCCTTTGACAGCCAGACCGAGCAGGGGCCACAGGTGGATGAAAC
TCAGTTTAATAAGGTCCTTGGCTATATCAAATCTGGGAAGGAAGAGGGGGCGAAGCTGCTGTGTGGTGGAGGGGCAGCTG
CTGACCGTGGCTACTTCATCCAGCCCACTGTGTTCGGAGATGTGCAAGATGGCATGACAATCGCAAAGGAGGAGATCTTC
GGGCCAGTGATGCAGATCCTGAAGTTCAAGACCATAGAGGAAGTCGTCGGGAGAGCCAACAATTCCAAGTATGGGCTGGC
CGCAGCTGTCTTCACAAAGGACTTGGACAAAGCCAATTATCTGTCCCAAGCCCTCCAGGCTGGCACTGTGTGGATCAACT
GCTATGACGTGTTTGGGGCCCAGTCACCATTTGGTGGCTACAAGATGTCTGGGAACGGCCGGGAGCTGGGAGAGTATGGC
CTGCAGGCATACACCGAGGTGAAAACTGTCACAATCAAAGTTCCTCAGAAGAACTCATAA
TCGGCGCCACCCAGGGCGTGCCGGCTCCCAAACCAGCAGCCCGAGGTCTTCTACAACCAGATCTTCATAAACAATGAGTG
GCACGACGCTGTCAGCAAGAAAACATTCCCCACCGTCAATCCGTCTACTGGGGAAGTCATCTGTCAGGTAGCAGCAGGCG
ACAAGGAAGATGTGGACAGGGCAGTGAAGGCTGCCCGGGCTGCCTTTCAGCTGGGCTCGCCCTGGCGCCGCATGGATGCA
TCTGACAGGGGCCGGCTGCTGAACCGCTTGGCTGATCTGATTGAACGGGACCGGACCTACCTGGCAGCCTTGGAGACCCT
GGATAATGGCAAGCCCTACGTCATCTCTTACCTGGTGGATTTGGACATGGTCCTCAAATGTCTCCGTTATTATGCTGGCT
GGGCCGATAAGTACCATGGGAAAACCATTCCCATCGATGGGGACTTCTTCAGCTACACCCGCCATGAACCTGTGGGGGTG
TGTGGGCAGATCATTCCGTGGAACTTCCCACTCTTGATGCAAGCATGGAAACTGGGCCCAGCCTTGGCGACTGGAAACGT
GGTTGTGATGAAGGTGGCCGAGCAGACTCCACTCACTGCCCTCTATGTGGCCAACTTGACTAAGGAGGCTGGCTTTCCCC
CTGGCGTGGTCAATGTTGTTCCTGGATTTGGCCCCACGGCTGGGGCTGCCATTGCCTCCCATGAGGATGTGGACAAAGTA
GCTTTCACAGGCTCCACTGAGGTTGGCCACCTAATCCAGGTTGCTGCAGGGAGGAGTAACCTCAAGAAAGTGACCCTGGA
GCTGGGAGGAAAAAGCCCTAACATCATCATGTCAGATGCTGACATGGACTGGGCGGTGGAGCAGGCCCACTTCGCCCTGT
TCTTCAACCAGGGCCAGTGCTGCTGTGCGGGCTCCCGGACCTTTGTGCAGGAGGATGTTTACGCTGAGTTTGTGGAGCGC
AGCGTTGCCCGGGCCCGGTCTCGTGTGGTTGGGAACCCCTTTGACAGCCAGACCGAGCAGGGGCCACAGGTGGATGAAAC
TCAGTTTAATAAGGTCCTTGGCTATATCAAATCTGGGAAGGAAGAGGGGGCGAAGCTGCTGTGTGGTGGAGGGGCAGCTG
CTGACCGTGGCTACTTCATCCAGCCCACTGTGTTCGGAGATGTGCAAGATGGCATGACAATCGCAAAGGAGGAGATCTTC
GGGCCAGTGATGCAGATCCTGAAGTTCAAGACCATAGAGGAAGTCGTCGGGAGAGCCAACAATTCCAAGTATGGGCTGGC
CGCAGCTGTCTTCACAAAGGACTTGGACAAAGCCAATTATCTGTCCCAAGCCCTCCAGGCTGGCACTGTGTGGATCAACT
GCTATGACGTGTTTGGGGCCCAGTCACCATTTGGTGGCTACAAGATGTCTGGGAACGGCCGGGAGCTGGGAGAGTATGGC
CTGCAGGCATACACCGAGGTGAAAACTGTCACAATCAAAGTTCCTCAGAAGAACTCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 191 .67 RPM |
| SRP021940_embryo | 125 .79 RPM |
| SRP021940_cerebellum | 217 .39 RPM |
| SRP021940_testis | 302 .77 RPM |
| SRP021940_placental_villous | 129 .52 RPM |
| SRP021940_articular_cartilage | 300 .46 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013664 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000008743 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000008683 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000022000 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000111275 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000007108 | ortholog_one2one | 1 retrogene | |
| Latimeria chalumnae | ENSLACG00000011798 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000003487 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017084 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000008336 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000002282 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000029455 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000000016 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000033093 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004966 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000013189 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000001344 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000009889 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000015009 | ortholog_one2one | 1 retrogene | |
| Xenopus tropicalis | ENSXETG00000020930 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_1054 | 77.56 | 50.70 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_1061 | 86.28 | 99.60 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000017673 retrocopies