Parental gene:

EBAG9, ENSSSCG00000006024

Aliases:None
Description:estrogen receptor binding site associated, antigen, 9 [Source:HGNC Symbol;Acc:3123]
Organism:Pig (Sus scrofa)
Coordinates:4:30227831..30255676(-)


>ENSSSCG00000006024
ATGGCTATCACACAGTTTCGGTTATTTAAAGTTTGTACCTGCCTAGCAACAGTATTCTCATTCCTAAAAAGATTAATATG
CAGATCTGGCAGAGGACGAAAGTTAAGTGGAGACCAAATAACTTTGCCAACTACAGTTGATTATTCATCAGTTCCTAAGC
AGGCAGATGTTGAAGAGTGGACTTCCTGGGATGAAGATGCACCCACAAGTGTAAAGATTGAAGGAGGGAATGGGAATGTG
GCAACGCAACAAAATGCTTTAGAACAACTTGAGCCTGACTATTTTAAAGACATGACACCAACTATAAGGAAAACCCAGAA
AATCATTATTAAGAAGAGAGAACCATTAAATTTTGGCATCCCAGATGGTAGCACAGGTTTCTCTAGTAGGCTAGCAGCTA
CACAAGATATGCCTTTTATTCATCAGTCTCCTGAATTAGGTGATTTGGATACCTGGCAGGAAAATACCAATGCATGGGAA
GAAGAAGAAGATGCAGCCTGGCAAGCTGAAGAAGTTCTGAGGCAGCAGAAGATAGCAGACAGGGAAAAGAGAGCAGCAGA
ACAACAAAGGAAGAAAATGGAAAAGGAAGCGCAGCGGCTAATGAAGAAGGAACAAAACAAAATTGGTGTGAAACTTTCAT
AA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .96 RPM
SRP014902_testis 9 .90 RPM
SRP018856_adipose 11 .74 RPM
SRP018288_kidney 46 .99 RPM
SRP018288_lung 29 .33 RPM
SRP018288_liver 32 .30 RPM
SRP018288_heart 26 .17 RPM
SRP035408_liver 65 .08 RPM
SRP035408_brain 52 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006190 ortholog_one2one 1 retrogene
retro_amel_1656,
Choloepus hoffmanni ENSCHOG00000007848 ortholog_one2one 5 retrogenes
retro_chof_1116, retro_chof_1455, retro_chof_1805, retro_chof_2245, retro_chof_751,
Cavia porcellus ENSCPOG00000001059 ortholog_one2one 1 retrogene
retro_cpor_1185,
Dipodomys ordii ENSDORG00000010177 ortholog_one2one 2 retrogenes
retro_dord_418, retro_dord_91,
Equus caballus ENSECAG00000009719 ortholog_one2one 2 retrogenes
retro_ecab_211, retro_ecab_232,
Felis catus ENSFCAG00000025490 ortholog_one2one 1 retrogene
retro_fcat_777,
Macropus eugenii ENSMEUG00000014115 ortholog_one2one 3 retrogenes
retro_meug_1871, retro_meug_2058, retro_meug_597,
Monodelphis domestica ENSMODG00000004795 ortholog_one2many 2 retrogenes
retro_mdom_261, retro_mdom_665,
Mus musculus ENSMUSG00000022339 ortholog_one2one 1 retrogene
retro_mmus_3501,
Rattus norvegicus ENSRNOG00000004220 ortholog_one2one 2 retrogenes
retro_rnor_2914, retro_rnor_2980,
Ictidomys tridecemlineatus ENSSTOG00000015326 ortholog_one2one 1 retrogene
retro_itri_1119,
Tursiops truncatus ENSTTRG00000001745 ortholog_one2one 2 retrogenes
retro_ttru_496, retro_ttru_672,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_569 65.35 92.96
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Download FASTA sequences of all ENSSSCG00000006024 retrocopies