Parental gene:

EBAG9, ENSCPOG00000001059

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:14599958..14611201(-)


>ENSCPOG00000001059
ATGGCCATCACTCAGTTTCGGTTATTTAAAGTTTGTACCTGCCTGGCAACAGTGTTCTCATTTCTGAAGAGGTTAATATG
CAGGTCTGGCAGAGGAAGGAAGTTAAGTGGAGATCAAATTACATTGCCAACTACTGTCGATTACTCATCAGTTCCTAAGC
AGACAGATGTGGAGGAGTGGACGTCCTGGGATGAAGATGCTCCCACGAGCGTGAAGATAGAAGGGGGCAATGGAAATGTG
GCCGCGCAGCAGAACGCCTTAGAGCAGCTGGAACCTGACTACTTTAAGGACATGACACCCACTATAAGGAAGACTCAGAA
AATTGTTATTAAGAAGAGAGAGCCATTAAATTTTGGCATTCCAGATGGTAGCACAGGTTTCTCCAGTAGATTAGCAGCTA
CACAAGATATGCCTTTTATTCATCAATCGTCTGAGTTGGGTGACTTGGATACCTGGCAAGAAAATACCAACGCTTGGGAA
GAAGAGGAAGACGCGGCCTGGCAGGCAGAAGAAGTCCTGAGGCAACAGAAAATAGCAGACAGAGAAAAGAGAGCAGCAGA
ACAACAAAGGAAGAAAATGGAAAAGGAAGCACAGAGGCTAATGAAGAAGGAACAAAACAAAATCGGTGTAAAACTTTCAT
AA

Library Parental gene expression (RPM)
SRP017611_liver 12 .54 RPM
SRP017611_kidney 12 .98 RPM
SRP017611_brain 9 .15 RPM
SRP040447_lung 7 .97 RPM
SRP040447_skeletal_muscle 13 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006190 ortholog_one2one 1 retrogene
retro_amel_1656,
Choloepus hoffmanni ENSCHOG00000007848 ortholog_one2one 5 retrogenes
retro_chof_1116, retro_chof_1455, retro_chof_1805, retro_chof_2245, retro_chof_751,
Dipodomys ordii ENSDORG00000010177 ortholog_one2one 2 retrogenes
retro_dord_418, retro_dord_91,
Equus caballus ENSECAG00000009719 ortholog_one2one 2 retrogenes
retro_ecab_211, retro_ecab_232,
Felis catus ENSFCAG00000025490 ortholog_one2one 1 retrogene
retro_fcat_777,
Macropus eugenii ENSMEUG00000014115 ortholog_one2one 3 retrogenes
retro_meug_1871, retro_meug_2058, retro_meug_597,
Monodelphis domestica ENSMODG00000004795 ortholog_one2many 2 retrogenes
retro_mdom_261, retro_mdom_665,
Mus musculus ENSMUSG00000022339 ortholog_one2one 1 retrogene
retro_mmus_3501,
Rattus norvegicus ENSRNOG00000004220 ortholog_one2one 2 retrogenes
retro_rnor_2914, retro_rnor_2980,
Sus scrofa ENSSSCG00000006024 ortholog_one2one 1 retrogene
retro_sscr_569,
Ictidomys tridecemlineatus ENSSTOG00000015326 ortholog_one2one 1 retrogene
retro_itri_1119,
Tursiops truncatus ENSTTRG00000001745 ortholog_one2one 2 retrogenes
retro_ttru_496, retro_ttru_672,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1185 69.83 53.99
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Download FASTA sequences of all ENSCPOG00000001059 retrocopies