Parental gene:

Ddx5, ENSRNOG00000030680

Aliases:None
Description:probable ATP-dependent RNA helicase DDX5 [Source:RefSeq peptide;Acc:NP_001007614]
Organism:Rat (Rattus norvegicus)
Coordinates:10:94726627..94734161(-)


>ENSRNOG00000030680
ATGTCGAGTTATTCTAGTGACCGAGACCGCGGCCGGGATCGAGGGTTTGGTGCACCTCGATTTGGAGGGAGTAGAACAGG
ACCCCTATCTGGAAAGAAGTTTGGAAATCCTGGGGAGAAACTAGTTAAAAAGAAGTGGAATCTTGATGAGCTGCCCAAAT
TTGAGAAGAATTTTTATCAGGAACACCCTGATTTGGCAAGGCGCACCGCACAAGAGGTAGATACGTACAGAAGAAGCAAG
GAAATTACAGTCAGAGGTCACAACTGTCCAAAACCTGTTCTGAATTTTTATGAAGCAAACTTTCCTGCAAATGTCATGGA
TGTGATTGCAAGGCAGAACTTCACTGAACCCACTGCTATCCAAGCTCAGGGCTGGCCAGTTGCTCTCAGTGGATTGGATA
TGGTTGGAGTAGCTCAGACTGGATCTGGGAAAACATTATCTTATTTGCTGCCTGCCATTGTACACATAAACCACCAGCCA
TTCTTAGAGAGAGGTGATGGGCCTATTTGCTTGGTGCTGGCACCAACTCGAGAACTGGCACAGCAGGTGCAGCAGGTCGC
TGCTGAATATTGTAGAGCTTGTCGCTTGAAGTCTACTTGCATCTATGGTGGTGCTCCCAAAGGACCGCAGATTCGTGATT
TGGAGAGAGGTGTGGAAATCTGTATTGCAACACCTGGAAGACTGATTGACTTTTTAGAGTGTGGGAAAACCAATCTGAGA
AGAACAACTTACCTTGTCCTTGATGAAGCTGATAGGATGCTTGATATGGGCTTTGAACCCCAAATAAGGAAAATTGTGGA
TCAAATAAGACCTGATAGGCAAACACTAATGTGGAGTGCAACTTGGCCAAAAGAAGTAAGACAGCTTGCTGAAGATTTCC
TGAAAGACTATATTCATATCAATATTGGTGCACTGGAACTGAGTGCAAACCATAACATTCTTCAGATTGTGGATGTGTGT
CATGATGTCGAAAAGGATGAAAAACTTATTCGTCTGATGGAAGAGATCATGAGTGAGAAGGAGAATAAAACCATTGTTTT
TGTTGAAACCAAAAGAAGATGTGATGAACTTACCAGAAAAATGAGGAGAGATGGGTGGCCTGCCATGGGCATCCATGGTG
ACAAGAGTCAACAGGAACGAGACTGGGTTCTAAATGAATTCAAACATGGAAAAGCTCCTATTCTGATTGCTACCGATGTG
GCCTCCAGAGGGCTAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCA
TCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACTCCCAATAACATAAAGCAAGTGA
GCGACCTCATCTCTGTGCTTCGGGAAGCCAATCAAGCAATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCA
GGTCGTTCCAGGGGTAGAGGAGGCATGAAGGATGATCGTCGTGACAGATACTCTGCAGGGAAAAGGGGTGGATTTAATAC
CTTTAGAGACAGGGAAAACTATGACAGAGGCTACTCTAGTCTGCTTAAGAGAGATTTTGGGGCTAAAACTCAGAATGGTG
TTTACAGTGCTGCAAATTACACCAATGGGAGCTTTGGAAGTAATTTTGTATCTGCTGGCATACAGACCAGTTTTAGGACT
GGTAACCCAACAGGGACTTACCAGAACGGTTATGATAGCACTCAGCAATATGGAAGTAATGTTGCAAATATGCACAATGG
GATGAACCAACAGGCATATGCATATCCTGCTACCGCAGCTGCTGCGCCTATGATTGGCTATCCAATGCCAACAGGGTATT
CTCAATAA

Library Parental gene expression (RPM)
SRP017611_liver 396 .23 RPM
SRP017611_kidney 658 .95 RPM
SRP017611_brain 475 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000019950 ortholog_one2one 1 retrogene
retro_etel_1009,
Felis catus ENSFCAG00000003512 ortholog_one2one 1 retrogene
retro_fcat_172,
Myotis lucifugus ENSMLUG00000009496 ortholog_one2one 4 retrogenes
retro_mluc_1136, retro_mluc_1499, retro_mluc_1845, retro_mluc_2208,
Monodelphis domestica ENSMODG00000003743 ortholog_one2one 4 retrogenes
retro_mdom_1519, retro_mdom_1520, retro_mdom_1955, retro_mdom_1956,
Mus musculus ENSMUSG00000020719 ortholog_one2one 1 retrogene
retro_mmus_788,
Pteropus vampyrus ENSPVAG00000001932 ortholog_one2one 1 retrogene
retro_pvam_1267,
Rattus norvegicus ENSRNOG00000013691 within_species_paralog 1 retrogene
retro_rnor_1276,
Tupaia belangeri ENSTBEG00000009490 ortholog_one2one 1 retrogene
retro_tbel_4260,
Tarsius syrichta ENSTSYG00000012149 ortholog_one2one 1 retrogene
retro_tsyr_1269,
Tursiops truncatus ENSTTRG00000008793 ortholog_one2one 1 retrogene
retro_ttru_1662,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1277 77.37 52.85
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Download FASTA sequences of all ENSRNOG00000030680 retrocopies