RetrogeneDB ID: retro_mluc_2208

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430104:1208189..1209596(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029493
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DDX5
• Ensembl ID: ENSMLUG00000009496
• Aliases: None
• Description: None

Sequence

>retro_mluc_2208
AAGGCTCCACCAGTGACTCGTTGCATCCGATTCTCTCTACTTCGTTCCCCGCTAACCGCAATCATTGACGCCATGTCGGG
CTATTCGAGCGACCGAGACCGAGGCCGGGATCGAGGGTTTGGTGCACCTCGATTTGGAGGAAGTAGGGCAGGGCCTCTAT
CAGGAAAGAAGTTTGGAAACCCTGGGGAGAAACTAGTTAAAAAGCAGTGGAATCTTGATGAACTGCCCAAATTTGAGAAG
AATTTTTACCAAGAACACCCTGATTTGGCCAGGCCCACAGCGCAAGAGGTCGAGACATACAGAAGAAGCAAGGAAATTAC
AGTTAGAGGACACAACTGCCCAAAGCCCATTCTGAATTTTTATGAAGCAAACTTCCCTGCAAACATCATGGATGCGATTG
CAAGACAGAACTTTACTGAACCCACTGCTATTCAAGCTCAGGGATGGCCAGTTGCCCTAAGTGGATTGGATATGGTTGGA
GTAGCACAGACTGGATCTGGGAAAACATTGTCTTATTTGCTGCCTGCCATTGTCCACATCAATCATCAGCCGTTCCTAGA
GAGAGGTGATGGACCTATTTGCTTGGTGCTGGCACCAACTCGGGAACTGGCCCAGCAGGTGCAGCAAGTGGCTGCTGAAT
ACTGTAGAGCGTGCCGATTGAAGTCTACTTGCATCTATGGTGGTGCTCCCAAGGGACCACAAATACGAGATTTGGAGAGA
GGTGTGGAGATCTGTATTGCAACACCTGGAAGACTGATTGACTTTTTAGAGTGTGGAAAAACAAATCTGAGACGAACCAC
CTACCTTGTCCTTGATGAAGCAGATAGAATGCTTGATATGGGCTTCGAACCCCAAATAAGGCCTGTGGACCAGATAAGGC
CTGACAGGCAAACCCTAATGTGGAGTGCAACTTGGCCAAAAGAAGTAAGACAGCTTGCTGAAGATTTCCTGAAAGACTAT
ATTCATATAAACGTTGGCGCACTGGAACTGAGTGCAAACCACAACATTCTTCAGATTGTGGATGTGTGTCATGATGTAGA
AAAGGATGAAAAACTTATTCGTCTGATGGAAGAGATCATGAGTGAGAAGGAGAGTAAAACCATTGTCTTTGTTGAAACCA
AAAGAAGATGTGATGAACTTACTAGAAAAATGAGGAGAGACGGGTGGCCTGCCATGGGTATTCATGGTGACAAGAGTCAA
CAGGAACGTGATTGGGTTCTAAGTGAATTCAAACATGGAAAAGCTCCTATTCTGATTGCTACGGATGTGGCTTCCAGAGG
GCTAGATGTGGGAGATGTTAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAA
GAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACC

Alignment

ORF - retro_mluc_2208 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.6 %
• Parental protein coverage: 70.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KPPPATRRTRFSPLRSPPTAIIDAMSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKW
          K.PP.TR..RFS.LRSP.TAIIDAMSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKK.W
Retrocopy KAPPVTRCIRFSLLRSPLTAIIDAMSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKQW

Parental  NLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANIMDVIARQNFTE
          NLDELPKFEKNFYQEHPDLAR.TAQEVETYRRSKEITVRGHNCPKP.LNFYEANFPANIMD.IARQNFTE
Retrocopy NLDELPKFEKNFYQEHPDLARPTAQEVETYRRSKEITVRGHNCPKPILNFYEANFPANIMDAIARQNFTE

Parental  PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV
          PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV
Retrocopy PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV

Parental  AAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM
          AAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM
Retrocopy AAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM

Parental  GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD
          GFEPQIR..VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN.GALELSANHNILQIVDVCHDVEKD
Retrocopy GFEPQIRP-VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINVGALELSANHNILQIVDVCHDVEKD

Parental  EKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILI
          EKLIRLMEEIMSEKE.KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVL.EFKHGKAPILI
Retrocopy EKLIRLMEEIMSEKESKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKAPILI

Parental  ATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT
          ATDVASRGLDV.DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT
Retrocopy ATDVASRGLDVGDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2208 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000019950	1 retrocopy	retro_etel_1009,
Felis catus	ENSFCAG00000003512	1 retrocopy	retro_fcat_172,
Myotis lucifugus	ENSMLUG00000009496	4 retrocopies	retro_mluc_1136, retro_mluc_1499, retro_mluc_1845, retro_mluc_2208 ,
Monodelphis domestica	ENSMODG00000003743	4 retrocopies	retro_mdom_1519, retro_mdom_1520, retro_mdom_1955, retro_mdom_1956,
Mus musculus	ENSMUSG00000020719	1 retrocopy	retro_mmus_788,
Pteropus vampyrus	ENSPVAG00000001932	1 retrocopy	retro_pvam_1267,
Rattus norvegicus	ENSRNOG00000030680	1 retrocopy	retro_rnor_1277,
Tupaia belangeri	ENSTBEG00000009490	1 retrocopy	retro_tbel_4260,
Tarsius syrichta	ENSTSYG00000012149	1 retrocopy	retro_tsyr_1269,
Tursiops truncatus	ENSTTRG00000008793	1 retrocopy	retro_ttru_1662,