Parental gene:

Btf3, ENSRNOG00000016912

Aliases:None
Description:transcription factor BTF3 [Source:RefSeq peptide;Acc:NP_001008310]
Organism:Rat (Rattus norvegicus)
Coordinates:2:47518638..47525723(-)


>ENSRNOG00000016912
ATGAAAGAAACGATCATGAACCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCG
TAGAAAGAAGAAGGTGGTTCACAGAACAGCCACAGCAGACGATAAAAAACTGCAGTTCTCCTTAAAGAAGTTAGGGGTAA
ACAATATCTCTGGTATTGAAGAGGTGAACATGTTTACAAACCAAGGAACAGTGATCCATTTTAACAACCCTAAAGTTCAG
GCGTCTTTGGCAGCAAACACCTTCACCATTACAGGCCACGCCGAGACAAAGCAGCTGACAGAAATGCTTCCCAGCATCCT
CAACCAGCTTGGTGCAGACAGTCTGACCAGTTTGAGGAGACTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAG
CACCACTTGCTACTGGAGAGGATGATGATGATGAAGTTCCAGATCTGGTGGAGAATTTTGATGAAGCTTCTAAGAACGAG
GCAAACTGA

Library Parental gene expression (RPM)
SRP017611_liver 35 .50 RPM
SRP017611_kidney 93 .58 RPM
SRP017611_brain 39 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010012 possible_ortholog 5 retrogenes
retro_btau_1161, retro_btau_1344, retro_btau_1361, retro_btau_459, retro_btau_551,
Callithrix jacchus ENSCJAG00000016600 possible_ortholog 4 retrogenes
retro_cjac_1454, retro_cjac_1673, retro_cjac_2640, retro_cjac_281,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Equus caballus ENSECAG00000021629 possible_ortholog 1 retrogene
retro_ecab_200,
Echinops telfairi ENSETEG00000017341 ortholog_one2many 5 retrogenes
retro_etel_1216, retro_etel_1394, retro_etel_1997, retro_etel_405, retro_etel_960,
Gorilla gorilla ENSGGOG00000000166 ortholog_one2many 10 retrogenes
retro_ggor_1082, retro_ggor_1682, retro_ggor_1961, retro_ggor_2054, retro_ggor_2399, retro_ggor_2647, retro_ggor_2667, retro_ggor_548, retro_ggor_81, retro_ggor_946,
Microcebus murinus ENSMICG00000017182 possible_ortholog 3 retrogenes
retro_mmur_1219, retro_mmur_1301, retro_mmur_651,
Monodelphis domestica ENSMODG00000001762 possible_ortholog 3 retrogenes
retro_mdom_189, retro_mdom_454, retro_mdom_931,
Nomascus leucogenys ENSNLEG00000004718 possible_ortholog 9 retrogenes
retro_nleu_1081, retro_nleu_1199, retro_nleu_1284, retro_nleu_1446, retro_nleu_1797, retro_nleu_2526, retro_nleu_451, retro_nleu_496, retro_nleu_734,
Oryctolagus cuniculus ENSOCUG00000024914 ortholog_one2many 6 retrogenes
retro_ocun_1186, retro_ocun_1299, retro_ocun_1364, retro_ocun_446, retro_ocun_857, retro_ocun_916,
Pongo abelii ENSPPYG00000029576 ortholog_one2many 14 retrogenes
retro_pabe_1154, retro_pabe_1477, retro_pabe_180, retro_pabe_1885, retro_pabe_1956, retro_pabe_2207, retro_pabe_2458, retro_pabe_2918, retro_pabe_2919, retro_pabe_2932, retro_pabe_3329, retro_pabe_3484, retro_pabe_558, retro_pabe_649,
Rattus norvegicus ENSRNOG00000008512 within_species_paralog 8 retrogenes
retro_rnor_1113, retro_rnor_1666, retro_rnor_1870, retro_rnor_1871, retro_rnor_1872, retro_rnor_537, retro_rnor_760, retro_rnor_998,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_187 96.91 100.00
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2. retro_rnor_194 96.91 100.00
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3. retro_rnor_836 73.81 100.00
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4. retro_rnor_953 75.36 84.57
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5. retro_rnor_2121 80.68 53.09
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6. retro_rnor_2520 70.37 82.10
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7. retro_rnor_2990 82.65 60.49
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8. retro_rnor_2991 82.65 60.49
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9. retro_rnor_2999 82.65 60.49
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Download FASTA sequences of all ENSRNOG00000016912 retrocopies