RetrogeneDB ID:

retro_nleu_1446

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397293.1:19047269..19047649(-)
Located in intron of:ENSNLEG00000003903
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BTF3
Ensembl ID:ENSNLEG00000004718
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1446
TCAGCTACAGCAGATGATAAAAACTTCAGTTCTCCTTAAGAAGTTAAGGGTAAACAATATCTCTGGTATTGAAGAGGTGA
GTATGTTTTCAAATGAAGACCGGTGATCCACTTTAACAACCTAAAATGCTGGCAGCATTTCTCTGGGGCAGTGAACACTT
TCACCATTACAGGCCACGCTGAGACAAAGCAGCTGACAGAAATGCTACCAGCATCTTAAACTAGCTTGGTGCAGACAATC
TGACTAGTTTAAGGAGACCGACTGAAGCTCTGCCCAAATAGTCTGTGGATGGAAAAGCACTCCTTGCTACTGGAGGGGAT
GGTGATGAAGTTCCAGATCTTGTGAGGAGTTTTGATGAGGCTATTAAGAATGAGGCAAAT

ORF - retro_nleu_1446 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.94 %
Parental protein coverage: 61.65 %
Number of stop codons detected: 2
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalTATADDK-KLQFSL-KKLGVNNISGIEEVNMFTNQGT-VIHFNNPKV--QASLAANTFTITGHAETKQLT
.ATADDK.KLQFSL.KKL.VNNISGIEEV.MF.N....VIHFNN.K.....S.A.NTFTITGHAETKQLT
RetrocopySATADDK<KLQFSL<KKLRVNNISGIEEVSMFSNEDR<VIHFNNLKCWQHFSGAVNTFTITGHAETKQLT
ParentalEMLP-SILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEGN
EMLP.SILN.LGAD.LTSLRR..EALPK.SVDGKA.LATG..D.DEVPDLV..FDEA.KNE.N
RetrocopyEMLP<SILN*LGADNLTSLRRPTEALPK*SVDGKALLATG-GDGDEVPDLVRSFDEAIKNEAN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Nomascus leucogenys was not studied using RNA-Seq expression data.