Parental gene: | Rnf138, ENSRNOG00000015645 |
| Aliases: | None |
| Description: | E3 ubiquitin-protein ligase RNF138 [Source:RefSeq peptide;Acc:NP_446040] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 18:14930044..14956940(-) |
>ENSRNOG00000015645
ATGTCCGAGGAGCTTTCGGCGGACACGTCCTACACGGAAGATGATTTCTACTGCCCAGTCTGTCAGGAGGTGCTCAAGAC
GCCGGTGCGGACCGCGGCCTGTCAGCACGTCCTCACGCTGTGTCCCCTGCGGAGAATGGGCGGGACCTGCTCATGCTGCT
GTATCAAGATTAAATTTTATCGCATGAGACATCATTACAAATCTTGTAAGAAGTATCAGGATGAATATGGTGTCTCTTCT
GTCATTCCAAATGTTAAGATTTCTCAAGATTCAGTAAGGAGCAGTAATAGGAGTGAAACATCTGCATCTGATAACACAGA
AACTTATCAAGAGGATACAAGTTCTTCTGGGCATCCCACCTTTAAGTGTCCCTTATGTCAAGAGTCAAATTTCACCAGAC
AACGTTTATTGGATCACTGTAATAGTAACCACCTGTTTCAGATAGTTCCTGTGAATCTTCAGCTAGATGAGGAAACCCAA
TATCAAACTGCTGTGGAAGAGTCTTTCCAAGTTAACATGTGA
ATGTCCGAGGAGCTTTCGGCGGACACGTCCTACACGGAAGATGATTTCTACTGCCCAGTCTGTCAGGAGGTGCTCAAGAC
GCCGGTGCGGACCGCGGCCTGTCAGCACGTCCTCACGCTGTGTCCCCTGCGGAGAATGGGCGGGACCTGCTCATGCTGCT
GTATCAAGATTAAATTTTATCGCATGAGACATCATTACAAATCTTGTAAGAAGTATCAGGATGAATATGGTGTCTCTTCT
GTCATTCCAAATGTTAAGATTTCTCAAGATTCAGTAAGGAGCAGTAATAGGAGTGAAACATCTGCATCTGATAACACAGA
AACTTATCAAGAGGATACAAGTTCTTCTGGGCATCCCACCTTTAAGTGTCCCTTATGTCAAGAGTCAAATTTCACCAGAC
AACGTTTATTGGATCACTGTAATAGTAACCACCTGTTTCAGATAGTTCCTGTGAATCTTCAGCTAGATGAGGAAACCCAA
TATCAAACTGCTGTGGAAGAGTCTTTCCAAGTTAACATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 5 .92 RPM |
| SRP017611_kidney | 9 .77 RPM |
| SRP017611_brain | 13 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020160 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000012689 | ortholog_one2one | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020875 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000014180 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000134758 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000027857 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003811 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000010850 | ortholog_many2many | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000006982 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000006401 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000009094 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009956 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000003778 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000002293 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_808 | 80.68 | 50.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_965 | 79.51 | 69.94 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2316 | 73.60 | 71.68 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000015645 retrocopies