Parental gene:

Rps2, ENSRNOG00000014179

Aliases:Rps2, Rps2r1
Description:40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952]
Organism:Rat (Rattus norvegicus)
Coordinates:10:13903887..13905746(+)


>ENSRNOG00000014179
ATGGCGGATGACGCCGGTGCAGCGGGAGGGCCCGGAGGACCCGGGGGCCCAGGATTAGGAGGCCGCGGCGGCTTCCGCGG
AGGATTCGGCAGCGGCCTTAGGGGCCGCGGTCGTGGCCGAGGCCGTGGCCGCGGTCGAGGCCGCGGGGCTCGTGGAGGTA
AAGCTGAAGACAAGGAGTGGATCCCCGTTACCAAGCTGGGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAG
ATCTACCTGTTCTCCCTGCCCATTAAGGAGTCTGAGATTATTGACTTTTTCCTGGGTGCATCTCTAAAGGATGAAGTTCT
GAAAATCATGCCAGTGCAGAAGCAGACTCGGGCTGGCCAGCGGACCAGGTTCAAGGCCTTTGTCGCTATTGGGGACTACA
ATGGCCACGTTGGTCTTGGTGTTAAGTGCTCCAAGGAGGTAGCCACTGCCATCCGAGGGGCCATCATCCTGGCCAAGCTT
TCGATCGTCCCAGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTGCCATGCAAGGTGACAGGCCG
CTGTGGCTCTGTGCTGGTTCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCTGTGCCCAAGAAGCTAC
TGATGATGGCCGGTATAGATGACTGCTACACTTCAGCCAGGGGCTGCACTGCCACCCTGGGCAACTTTGCCAAGGCCACC
TTTGATGCCATCTCCAAGACCTACAGCTACCTGACCCCTGACCTCTGGAAAGAGACTGTGTTCACCAAGTCTCCTTATCA
GGAATTCACTGACCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACAT
AA

Library Parental gene expression (RPM)
SRP017611_liver 159 .89 RPM
SRP017611_kidney 209 .07 RPM
SRP017611_brain 122 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002549 ortholog_one2many 1 retrogene
retro_acar_57,
Bos taurus ENSBTAG00000009535 possible_ortholog 7 retrogenes
retro_btau_1236, retro_btau_1420, retro_btau_1656, retro_btau_317, retro_btau_590, retro_btau_661, retro_btau_956,
Canis familiaris ENSCAFG00000019472 possible_ortholog 19 retrogenes
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
Cavia porcellus ENSCPOG00000011651 possible_ortholog 11 retrogenes
retro_cpor_1030, retro_cpor_1238, retro_cpor_1376, retro_cpor_1469, retro_cpor_1527, retro_cpor_177, retro_cpor_19, retro_cpor_437, retro_cpor_718, retro_cpor_769, retro_cpor_808,
Dipodomys ordii ENSDORG00000007375 ortholog_one2one 18 retrogenes
retro_dord_163, retro_dord_206, retro_dord_215, retro_dord_284, retro_dord_392, retro_dord_445, retro_dord_465, retro_dord_499, retro_dord_500, retro_dord_505, retro_dord_568, retro_dord_571, retro_dord_572, retro_dord_683, retro_dord_703, retro_dord_711, retro_dord_723, retro_dord_89,
Equus caballus ENSECAG00000009065 possible_ortholog 7 retrogenes
retro_ecab_1025, retro_ecab_1105, retro_ecab_509, retro_ecab_632, retro_ecab_876, retro_ecab_892, retro_ecab_949,
Loxodonta africana ENSLAFG00000004696 possible_ortholog 11 retrogenes
retro_lafr_1072, retro_lafr_1092, retro_lafr_1103, retro_lafr_174, retro_lafr_284, retro_lafr_327, retro_lafr_376, retro_lafr_75, retro_lafr_801, retro_lafr_812, retro_lafr_917,
Macropus eugenii ENSMEUG00000004508 possible_ortholog 2 retrogenes
retro_meug_156, retro_meug_2103,
Monodelphis domestica ENSMODG00000016077 possible_ortholog 1 retrogene
retro_mdom_536,
Mus musculus ENSMUSG00000044533 ortholog_one2many 1 retrogene
retro_mmus_148,
Procavia capensis ENSPCAG00000002090 possible_ortholog 2 retrogenes
retro_pcap_251, retro_pcap_433,
Pteropus vampyrus ENSPVAG00000016704 possible_ortholog 8 retrogenes
retro_pvam_1395, retro_pvam_1486, retro_pvam_221, retro_pvam_240, retro_pvam_34, retro_pvam_459, retro_pvam_521, retro_pvam_595,
Sarcophilus harrisii ENSSHAG00000015213 possible_ortholog 5 retrogenes
retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,
Tursiops truncatus ENSTTRG00000011393 possible_ortholog 12 retrogenes
retro_ttru_1341, retro_ttru_1346, retro_ttru_1414, retro_ttru_149, retro_ttru_1762, retro_ttru_1816, retro_ttru_37, retro_ttru_375, retro_ttru_419, retro_ttru_650, retro_ttru_719, retro_ttru_872,
Vicugna pacos ENSVPAG00000006867 possible_ortholog 6 retrogenes
retro_vpac_114, retro_vpac_164, retro_vpac_220, retro_vpac_354, retro_vpac_379, retro_vpac_518,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_438 81.14 100.00
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2. retro_rnor_631 77.97 79.86
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3. retro_rnor_681 89.83 100.00
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4. retro_rnor_690 81.31 73.04
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5. retro_rnor_809 89.18 64.85
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6. retro_rnor_810 89.18 64.85
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7. retro_rnor_878 68.45 56.66
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8. retro_rnor_1882 77.99 87.37
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9. retro_rnor_2191 86.32 78.84
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10. retro_rnor_2257 94.44 85.32
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11. retro_rnor_2274 59.79 65.53
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12. retro_rnor_2903 82.00 100.00
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Download FASTA sequences of all ENSRNOG00000014179 retrocopies