Parental gene:

ENSCAFG00000019472

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:6:38966853..38968703(+)


>ENSCAFG00000019472
ATGGCGGATGACGCCGGTGCTGCGGGAGGGCCCGGAGGCCCCGGGGGCCCCGGAATGGGAGGCCGCGGCGGCTTCCGCGG
AGGCTTCGGCAGCGGCATCCGGGGCCGCGGGCGTGGCCGTGGTCGGGGCCGGGGCCGGGGCCGCGGAGCTCGCGGAGGCA
AGGCGGAGGACAAGGAGTGGATCCCCGTCACCAAGCTGGGCCGCCTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAG
ATCTATCTGTTTTCTCTGCCCATCAAGGAATCTGAGATCATTGACTTTTTCTTGGGGGCGTCCCTCAAGGATGAGGTCTT
GAAAATCATGCCCGTGCAAAAGCAGACCCGTGCTGGCCAACGGACCAGGTTCAAGGCATTCGTTGCCATCGGAGATTACA
ACGGACACGTGGGTCTGGGCGTCAAGTGCTCCAAGGAGGTAGCCACTGCCATCCGTGGGGCCATCATCCTGGCCAAGCTT
TCCATTGTCCCCGTGCGACGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACTGTCCCATGCAAGGTGACTGGTCG
CTGTGGTTCTGTGCTGGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCGGCCCCTGTGCCCAAGAAGCTAC
TGATGATGGCTGGTATTGACGACTGCTATACTTCGGCCAGGGGCTGCACTGCCACCCTGGGGAACTTTGCCAAGGCTACT
TTTGATGCGATCTCTAAGACCTACAGCTATCTCACCCCTGATCTCTGGAAAGAGACTGTGTTCACCAAGTCTCCCTATCA
GGAATTCACTGACCATCTTGTAAAGACCCACACCAGAGTCTCCGTGCAGAGGACCCAGGCTCCAGCTGTGGCCACCACAT
AG

Library Parental gene expression (RPM)
SRP017611_brain 141 .00 RPM
SRP017611_kidney 1239 .39 RPM
SRP017611_liver 306 .08 RPM
SRP012049_cerebellum 405 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002549 ortholog_one2many 1 retrogene
retro_acar_57,
Bos taurus ENSBTAG00000009535 possible_ortholog 7 retrogenes
retro_btau_1236, retro_btau_1420, retro_btau_1656, retro_btau_317, retro_btau_590, retro_btau_661, retro_btau_956,
Cavia porcellus ENSCPOG00000011651 possible_ortholog 11 retrogenes
retro_cpor_1030, retro_cpor_1238, retro_cpor_1376, retro_cpor_1469, retro_cpor_1527, retro_cpor_177, retro_cpor_19, retro_cpor_437, retro_cpor_718, retro_cpor_769, retro_cpor_808,
Equus caballus ENSECAG00000009065 ortholog_one2one 7 retrogenes
retro_ecab_1025, retro_ecab_1105, retro_ecab_509, retro_ecab_632, retro_ecab_876, retro_ecab_892, retro_ecab_949,
Loxodonta africana ENSLAFG00000004696 possible_ortholog 11 retrogenes
retro_lafr_1072, retro_lafr_1092, retro_lafr_1103, retro_lafr_174, retro_lafr_284, retro_lafr_327, retro_lafr_376, retro_lafr_75, retro_lafr_801, retro_lafr_812, retro_lafr_917,
Macropus eugenii ENSMEUG00000004508 possible_ortholog 2 retrogenes
retro_meug_156, retro_meug_2103,
Monodelphis domestica ENSMODG00000016077 possible_ortholog 1 retrogene
retro_mdom_536,
Mus musculus ENSMUSG00000044533 possible_ortholog 1 retrogene
retro_mmus_148,
Procavia capensis ENSPCAG00000002090 possible_ortholog 2 retrogenes
retro_pcap_251, retro_pcap_433,
Pteropus vampyrus ENSPVAG00000016704 ortholog_one2one 8 retrogenes
retro_pvam_1395, retro_pvam_1486, retro_pvam_221, retro_pvam_240, retro_pvam_34, retro_pvam_459, retro_pvam_521, retro_pvam_595,
Rattus norvegicus ENSRNOG00000014179 possible_ortholog 12 retrogenes
retro_rnor_1882, retro_rnor_2191, retro_rnor_2257, retro_rnor_2274, retro_rnor_2903, retro_rnor_438, retro_rnor_631, retro_rnor_681, retro_rnor_690, retro_rnor_809, retro_rnor_810, retro_rnor_878,
Sarcophilus harrisii ENSSHAG00000015213 possible_ortholog 5 retrogenes
retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,
Tursiops truncatus ENSTTRG00000011393 possible_ortholog 12 retrogenes
retro_ttru_1341, retro_ttru_1346, retro_ttru_1414, retro_ttru_149, retro_ttru_1762, retro_ttru_1816, retro_ttru_37, retro_ttru_375, retro_ttru_419, retro_ttru_650, retro_ttru_719, retro_ttru_872,
Vicugna pacos ENSVPAG00000006867 possible_ortholog 6 retrogenes
retro_vpac_114, retro_vpac_164, retro_vpac_220, retro_vpac_354, retro_vpac_379, retro_vpac_518,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_271 67.42 74.06
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2. retro_cfam_323 67.95 77.82
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3. retro_cfam_490 77.22 95.22
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4. retro_cfam_629 88.40 100.00
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5. retro_cfam_1028 90.91 86.35
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6. retro_cfam_1252 82.25 92.49
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7. retro_cfam_1321 92.86 61.43
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8. retro_cfam_1460 85.56 95.22
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9. retro_cfam_1560 69.12 72.70
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10. retro_cfam_1592 90.87 77.47
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11. retro_cfam_1842 67.58 60.75
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12. retro_cfam_1848 72.63 63.82
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13. retro_cfam_1932 99.61 88.05
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14. retro_cfam_1983 93.30 70.99
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15. retro_cfam_2007 84.52 84.64
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16. retro_cfam_2012 67.70 86.35
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17. retro_cfam_2046 90.54 50.17
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18. retro_cfam_2053 69.19 66.55
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19. retro_cfam_2110 87.46 96.59
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Download FASTA sequences of all ENSCAFG00000019472 retrocopies