RetrogeneDB ID:

retro_ttru_1762

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_90758:11692..12483(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS2
Ensembl ID:ENSTTRG00000011393
Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]


Retrocopy-Parental alignment summary:






>retro_ttru_1762
GCGGATGACGCTGGTGCTGCGGGAGGGTCCGGAGGCCCTGGGGGCCCTGGAATGGGAGGCCGAGGTGGCTTCCTCAGAGG
CTTCAGCCTAGGGGTCCTGGGCCGGGGCCAAGGCCACGGAGCTCACAGAGGCAAGGCCGAGGACGAGGAGAGGCTCCCTG
TCACCAAGCTGGGCCGCCTGGTCAAGGACATGAAGATCAAGTCCCTGGAGCAGATCTATCTCTTCTCTCTACCCATCAAG
GAATCTGAGATCACTGACTTTTTCTTGGGGGCATCCCTCAAGGATGAGGTTTTGAAGATTATGCCTGTGCAAAAGCAGAC
CTGTGCTGGCCATCGGACCAAGTTCAAGGCATTTGTTGCCACTGGGGATTACAACGGACAATGTGGTTTGGGTGTCAAGT
GCTCTAAGGAGGTAAGCCACTGCCATCCGTGGGGCCATCATTCAAGCCAAGCTCTCCATCGTCCCAGTGCAGCAAGGCTA
CTGGGGGAACAAGATTGGCAAGCCCCATACCATCCCTTGCAAGGTGAATGGCCGCTGTGGCTCTGTGCTGGTGTGCCTCA
TCCCTGCCCCCAGGGGCACGGGCATTGTCTTAGCCCCTGTGCCCAAGAAGCTACTGATAATGGCTGGAATTGACATCGCT
ACATCTCTGCAGGGGCTGCACCACCACCCTGAGCATTTCGCAGCCACTTTTGATGCATTTCAGACTACAGTATCTCACTC
TGATCTCTGGAAAGAAGAACAGGTGTTCACAAAGTCTTCTGTATCATGAATTCACTGACCATCCTGTAAAG

ORF - retro_ttru_1762 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.73 %
Parental protein coverage: 91.55 %
Number of stop codons detected: 0
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalAGGPGGPGGPGGPGMGSRGGFRGGFGSGVRGRGRGRGRGRGRGRGARGGKAEDKEWLPVTKLGRLVKDMK
A...G..GG.GGPG....G...GG.G...RG...G...GRG.G.GA..GKAED.E.LPVTKLGRLVKDMK
RetrocopyADDAGAAGGSGGPG----GPGMGGRGGFLRGFSLGV-LGRGQGHGAHRGKAEDEERLPVTKLGRLVKDMK
ParentalIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCS
IKSLE.IYLFSLPIKESEI.DFFLGASLKDEVLKIMPVQKQT.AG.RT.FKAFVA.GDYNG..GLGVKCS
RetrocopyIKSLEQIYLFSLPIKESEITDFFLGASLKDEVLKIMPVQKQTCAGHRTKFKAFVATGDYNGQCGLGVKCS
ParentalKEV-ATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKL
KEV.ATAIRGAII.AKLSIVPV..GYWGNKIGKPHT.PCKV.GRCGSVLV.LIPAPRGTGIV.APVPKKL
RetrocopyKEV>ATAIRGAIIQAKLSIVPVQQGYWGNKIGKPHTIPCKVNGRCGSVLVCLIPAPRGTGIVLAPVPKKL
ParentalLMMAGIDDC-YTSA-RGCTATLG-NFAKATFDAISKTYSYLTPDLWK-ETVFTKSP-YQEFTDHLVK
L.MAGID...Y.SA.RGCT.TL...FA.ATFDA...T.S....DLWK.E.VFTKS..Y.EFTDH.VK
RetrocopyLIMAGIDIA<YISA<RGCTTTLS<HFA-ATFDAFQTTVSH--SDLWKEEQVFTKSS>YHEFTDHPVK