Parental gene:

Cap1, ENSRNOG00000013492

Aliases:Cap1, Mch1
Description:Adenylyl cyclase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q08163]
Organism:Rat (Rattus norvegicus)
Coordinates:5:144350204..144376518(-)


>ENSRNOG00000013492
ATGGCTGACATGCAAAATCTTGTAGAAAGATTGGAGAGGGCAGTGGGCCGCCTGGAGGCGGTGTCACATACTTCTGACAT
GCACTGTGGATATGGAGACAGTCCTTCAAAAGGAGCAGTTCCATATGTGCAAGCATTTGACTCGCTGCTTGCCAATCCCG
TGGCGGAGTACTTGAAGATGAGTAAGGAGATTGGGGGAGATGTGCAGAAACACGCGGAGATGGTCCACACAGGCCTGAAG
TTGGAGCGAGCTCTCCTGGTTACAGCTTCTCAGTGCCAGCAGCCAGCCGGTAATAAACTCTCGGATTTGTTGGCCCCTAT
CTCGGAGCAGATCCAGGAAGTTATAACCTTCCGGGAGAAGAACCGAGGCAGCAAGTTTTTCAATCATCTATCAGCTGTCA
GTGAAAGCATCCAGGCCCTGGGCTGGGTGGCTCTGGCTGCGAAACCCGGCCCCTTTGTGAAAGAGATGAATGATGCCGCC
ATGTTTTACACAAACCGAGTCCTCAAGGAGTACAGAGATGTGGATAAAAAGCATGTGGACTGGGTTAGAGCTTACTTGAG
TATATGGACAGAACTGCAGGCTTACATCAAGGAGTTCCATACCACTGGCCTGGCCTGGAGCAAGACGGGGCCTGTGGCAA
AAGAACTGAGTGGATTGCCATCTGGACCTTCTGTGGGATCAGGCCCACCTCCTCCCCCACCAGGCCCTCCTCCTCCCCCA
GTTCCTACCAGTTCTGGCTCTGACGACTCTGCTTCACGCTCAGCACTGTTTGCACAGATTAATCAGGGGGAAAGCATCAC
ACATGCCCTGAAACATGTATCTGATGACATGAAGACTCACAAGAACCCTGCCCTGAAAGCTCAGAGTGGTCCAGTTCGGA
GTGGCCCCAAACCATTCTCTGCACCTAAACCCCAAACTAGCCCCTCCCCCAAACCAGCCACAAAGAAGGAGCCAGCTCTG
CTGGAACTGGAAGGCAAGAAATGGAGAGTGGAAAACCAGGAGAATGTTTCCAACCTGGTGATCGATGACACTGAGCTGAA
GCAGGTGGCTTACATCTACAAGTGTGTCAACACGACATTGCAAATCAAGGGCAAAATCAATTCCATTACAGTAGATAACT
GTAAGAAGCTTGGCCTGGTGTTTGATGACGTGGTGGGCATTGTGGAGATAATCAATAGTAGGGATGTCAAAGTTCAGGTG
ATGGGAAAAGTGCCAACCATTTCCATTAACAAAACAGATGGCTGCCACGCTTACCTGAGTAAGAACTCCCTGGACTGCGA
GATAGTCAGTGCCAAATCTTCTGAGATGAACGTCCTCATTCCTACAGAAGGCGGTGATTTTAACGAGTTCCCAGTCCCTG
AGCAGTTCAAGACCTTGTGGAACGGACAGAAGTTGGTCACCACAGTGACAGAAATCGCTGGATAA

Library Parental gene expression (RPM)
SRP017611_liver 43 .30 RPM
SRP017611_kidney 134 .54 RPM
SRP017611_brain 230 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003012 possible_ortholog 2 retrogenes
retro_cfam_1316, retro_cfam_645,
Homo sapiens ENSG00000131236 ortholog_one2one 2 retrogenes
retro_hsap_2666, retro_hsap_664,
Gorilla gorilla ENSGGOG00000027527 ortholog_one2one 2 retrogenes
retro_ggor_1860, retro_ggor_575,
Macropus eugenii ENSMEUG00000004960 ortholog_one2one 1 retrogene
retro_meug_544,
Mus musculus ENSMUSG00000028656 ortholog_one2one 1 retrogene
retro_mmus_1265,
Nomascus leucogenys ENSNLEG00000012077 ortholog_one2one 2 retrogenes
retro_nleu_1600, retro_nleu_2221,
Otolemur garnettii ENSOGAG00000005492 ortholog_one2one 1 retrogene
retro_ogar_299,
Pongo abelii ENSPPYG00000001496 ortholog_one2one 4 retrogenes
retro_pabe_2212, retro_pabe_2358, retro_pabe_2415, retro_pabe_584,
Pan troglodytes ENSPTRG00000000583 ortholog_one2one 2 retrogenes
retro_ptro_1796, retro_ptro_484,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1180 69.58 54.64
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Download FASTA sequences of all ENSRNOG00000013492 retrocopies