Parental gene: | Ddx6, ENSRNOG00000012453 |
| Aliases: | Ddx6, RGD1564560 |
| Description: | probable ATP-dependent RNA helicase DDX6 [Source:RefSeq peptide;Acc:NP_001102762] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 8:47543902..47576345(+) |
>ENSRNOG00000012453
ATGAGCACGGCCAGGACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGC
CAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAATG
GCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCA
AAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTT
GCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTA
GGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCTG
AAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGT
CAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACG
ATACAGTGCATGTGGTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTC
CAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACACT
ACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAA
AACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAA
AAAGTGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGT
TGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGAA
ATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATA
CAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCG
CTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGG
GGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGAT
GAGAAACCTTAA
ATGAGCACGGCCAGGACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGC
CAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAATG
GCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCA
AAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTT
GCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTA
GGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCTG
AAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGT
CAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACG
ATACAGTGCATGTGGTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTC
CAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACACT
ACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAA
AACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAA
AAAGTGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGT
TGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGAA
ATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATA
CAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCG
CTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGG
GGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGAT
GAGAAACCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 17 .95 RPM |
| SRP017611_kidney | 25 .89 RPM |
| SRP017611_brain | 21 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000012442 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000013591 | ortholog_one2one | 3 retrogenes | |
| ENSG00000110367 | ortholog_one2one | 0 retrogenes |
|
|
| Gorilla gorilla | ENSGGOG00000016751 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000018651 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000032097 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000007372 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007978 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003942 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000004353 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_900 | 97.37 | 86.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_901 | 99.72 | 74.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2546 | 97.53 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_2613 | 96.63 | 55.28 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000012453 retrocopies