Parental gene: | DDX6, ENSPTRG00000004353 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 11:116677762..116720060(-) |
>ENSPTRG00000004353
ATGAGCACGGCCAGAACAGAGAACCCTGTTATAATGGGTCTGTCCAGTCAAAATGGTCAGCTGAGAGGCCCTGTGAAACC
CACTGGTGGCCCTGGAGGAGGGGGCACACAGACACAGCAACAGATGAACCAGCTGAAAAACACCAACACAATCAATAATG
GCACTCAGCAGCAAGCACAGAGTATGACCACCACTATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCA
AAGGATCTAAGAATCAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGGGAGTT
ACTGATGGGAATTTTTGAAATGGGCTGGGAAAAGCCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTA
GGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAGAGCGGTGCCTACCTCATTCCCTTACTTGAACGGCTAGACCTG
AAGAAGGACAATATACAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGT
CAGCAAACACATGGGAGGGGCCAAAGTGATGGCAACCACAGGAGGAACCAATTTACGAGATGACATAATGAGGCTTGATG
ATACAGTGCACGTGGTGATTGCTACCCCTGGGAGAATCCTGGATCTTATTAAGAAAGGAGTAGCAAAGGTTGATCATGTC
CAGATGATAGTATTGGATGAGGCAGATAAGTTGCTGTCACAGGATTTTGTGCAGATAATGGAGGATATTATTCTCACGCT
ACCTAAAAACAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAGAAGTTCATGAATTCCCATTTGCAGA
AACCCTATGAGATTAACCTGATGGAGGAACTAACTCTGAAGGGAGTAACCCAGTACTACGCATATGTAACTGAGCGCCAA
AAAGTACACTGCCTCAACACACTTTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGTAACTCCTCTCAGCGAGT
TGAATTGCTAGCCAAGAAGATTTCTCAACTGGGTTATTCTTGCTTCTATATTCATGCTAAAATGAGGCAGGAACATCGAA
ATCGTGTATTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATA
CAAGCTGTGAATGTGGTAATAAACTTTGATTTCCCAAAGCTGGCAGAGACCTATCTCCATCGTATTGGAAGATCAGGTCG
CTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAAAGTATTGAGGAGCAGCTGG
GAACAGAAATTAAACCTATTCCGAGCAACATTGATAAGAGCCTGTATGTGGCAGAATACCACAGCGAGCCTGTAGAAGAT
GAGAAACCTTAA
ATGAGCACGGCCAGAACAGAGAACCCTGTTATAATGGGTCTGTCCAGTCAAAATGGTCAGCTGAGAGGCCCTGTGAAACC
CACTGGTGGCCCTGGAGGAGGGGGCACACAGACACAGCAACAGATGAACCAGCTGAAAAACACCAACACAATCAATAATG
GCACTCAGCAGCAAGCACAGAGTATGACCACCACTATTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCA
AAGGATCTAAGAATCAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGGGAGTT
ACTGATGGGAATTTTTGAAATGGGCTGGGAAAAGCCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTA
GGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAGAGCGGTGCCTACCTCATTCCCTTACTTGAACGGCTAGACCTG
AAGAAGGACAATATACAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGT
CAGCAAACACATGGGAGGGGCCAAAGTGATGGCAACCACAGGAGGAACCAATTTACGAGATGACATAATGAGGCTTGATG
ATACAGTGCACGTGGTGATTGCTACCCCTGGGAGAATCCTGGATCTTATTAAGAAAGGAGTAGCAAAGGTTGATCATGTC
CAGATGATAGTATTGGATGAGGCAGATAAGTTGCTGTCACAGGATTTTGTGCAGATAATGGAGGATATTATTCTCACGCT
ACCTAAAAACAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAGAAGTTCATGAATTCCCATTTGCAGA
AACCCTATGAGATTAACCTGATGGAGGAACTAACTCTGAAGGGAGTAACCCAGTACTACGCATATGTAACTGAGCGCCAA
AAAGTACACTGCCTCAACACACTTTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGTAACTCCTCTCAGCGAGT
TGAATTGCTAGCCAAGAAGATTTCTCAACTGGGTTATTCTTGCTTCTATATTCATGCTAAAATGAGGCAGGAACATCGAA
ATCGTGTATTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATA
CAAGCTGTGAATGTGGTAATAAACTTTGATTTCCCAAAGCTGGCAGAGACCTATCTCCATCGTATTGGAAGATCAGGTCG
CTTTGGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAAAGTATTGAGGAGCAGCTGG
GAACAGAAATTAAACCTATTCCGAGCAACATTGATAAGAGCCTGTATGTGGCAGAATACCACAGCGAGCCTGTAGAAGAT
GAGAAACCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 49 .21 RPM |
| SRP007412_cerebellum | 100 .23 RPM |
| SRP007412_heart | 67 .47 RPM |
| SRP007412_kidney | 53 .06 RPM |
| SRP007412_liver | 19 .54 RPM |
| SRP007412_testis | 84 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000012442 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000013591 | ortholog_one2one | 3 retrogenes | |
| ENSG00000110367 | ortholog_one2one | 0 retrogenes |
|
|
| Gorilla gorilla | ENSGGOG00000016751 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000018651 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000032097 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000007372 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007978 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003942 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000012453 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_838 | 90.04 | 51.76 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2424 | 80.54 | 68.94 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000004353 retrocopies