Parental gene:

Ipo5, ENSRNOG00000010989

Aliases:Ipo5, Kpnb3, Ranbp5
Description:Protein Ipo5 [Source:UniProtKB/TrEMBL;Acc:D4A781]
Organism:Rat (Rattus norvegicus)
Coordinates:15:109653548..109688633(+)


>ENSRNOG00000010989
ATGGCGGCGGCCGCGGCGGAGCAGCAACAGTTCTACCTGCTCCTGGGAAACCTGCTCAGCCCCGACAATGTGGTCCGGAA
ACAGGCGGAGGAAACCTATGAGAATATCCCAGGCCGGTCCAAGATCACATTCCTCCTACAAGCCATCAGAAACACCACAG
CCGCTGAGGAGGCTAGACAAATGGCCGCTGTTCTCCTAAGACGTCTTTTGTCCTCTGCATTTGATGAAGTCTATCCAGCT
CTTCCATCAGATGTCCAGACCGCCATCAAGAGTGAATTGCTGATGATCATTCAGATGGAAACACAGTCCAGCATGAGGAA
GAAAATCTGTGATATTGCTGCAGAATTGGCCAGGAATTTAATAGATGAGGATGGCAACAACCAGTGGCCTGAAGGTTTGA
AGTTCCTCTTTGATTCAGTCAGCTCACAAAACATGGGACTCCGGGAAGCTGCCCTTCACATATTTTGGAACTTTCCTGGC
ATTTTTGGGAACCAGCAACAGCACTATTTGGACGTCATCAAACGGATGTTAGTTCAGTGTATGCAAGATCAGGAACATCC
TTCGATCCGGACACTGTCTGCCCGAGCTACAGCTGCCTTTATCCTTGCTAACGAGCACAACGTCGCTCTGTTCAAACACT
TCGCAGACCTGCTGCCTGGGTTCCTACAGGCTGTCAACGACTCATGCTACCAGAATGATGATTCGGTCCTAAAATCCCTT
GTTGAGATTGCAGATACGGTGCCAAAGTATTTGCGCCCTCACTTAGAAGCAACTCTACAGTTAAGTCTAAAGTTGTGTGG
AGACACTAACCTCAATAACATGCAGCGCCAGCTTGCCCTGGAAGTGATCGTGACGCTGTCGGAGACCGCAGCTGCTATGC
TAAGAAAGCACACCAATATTATCGCACAGACCATTCCTCAGATGTTGGCAATGATGGTTGACCTAGAAGAAGACGAGGAC
TGGGCAAATGCTGATGAGCTAGAAGATGATGATTTCGATAGCAATGCAGTTGCTGGTGAGAGCGCATTGGACCGAATGGC
CTGTGGACTGGGTGGGAAGCTCGTCCTGCCAATGATTAAGGAACACATTATGCAAATGCTTCAAAACGCTGATTGGAAAT
ACCGGCATGCGGGATTAATGGCCTTGTCCGCCATTGGTGAAGGATGCCACCAGCAGATGGAAGGAATTCTCAATGAGATT
GTAAATTTCGTCTTGCTTTTCCTCCAGGATCCTCACCCAAGAGTCCGGTACGCAGCCTGCAATGCCGTGGGTCAGATGGC
TACAGATTTCGCACCTGGTTTTCAAAAGAAATTTCATGAGAAGGTGATTGCAGCTTTGCTTCAGACCATGGAAGACCAAG
GCAACCAACGGGTGCAGGCCCACGCAGCAGCTGCCCTCATTAACTTCACGGAAGACTGTCCCAAGTCACTGCTTATTCCC
TACTTGGATAACTTGGTGAAGCATCTGCATTCCATTATGGTGCTCAAGCTTCAGGAGCTGATTCAGAAAGGCACCAAGTT
AGTTTTGGAACAAGTTGTGACATCCATTGCATCAGTTGCAGATACTGCAGAAGAAAAGTTTGTCCCCTACTATGACTTAT
TCATGCCTTCACTGAAGCACATTGTTGAGAATGCAGTCCAGAAGGAGCTGAGACTGCTGAGAGGGAAGACCATCGAGTGC
ATCAGCCTCATTGGTCTGGCCGTCGGGAAGGAGAAGTTCATGCAGGACGCTTCGGATGTCATGCAGCTGTTGTTGAAGAC
GCAGACCGACTTCAATGACATGGAAGATGACGACCCTCAGATTTCTTACATGATCTCAGCGTGGGCCAGGATGTGCAAAA
TCCTTGGGAAAGAATTCCAGCAGTACCTTCCTGTGGTTATGGGGCCACTGATGAAGACCGCTTCAATTAAGCCTGAAGTG
GCCCTTCTAGACACCCAGGACATGGAGAATATGAGTGACGACGATGGTTGGGAATTTGTAAACCTTGGAGATCAGCAGAG
TTTTGGTATTAAAACTGCAGGACTGGAGGAGAAGTCAACGGCTTGCCAGATGCTGGTTTGTTATGCTAAGGAATTAAAGG
AAGGTTTCGTGGAATACACTGAACAGGTTGTCAAACTGATGGTCCCACTGCTGAAATTTTATTTCCATGATGGGGTTCGA
GTGGCAGCAGCAGAGTCCATGCCTCTTCTGCTGGAGTGTGCAAGAGTCCGGGGTCCCGAGTACCTTACACAGATGTGGCA
CTTCATGTGCGATGCTCTCATCAAGGCCATTGGCACGGAGCCTGACTCAGACGTCCTCTCGGAAATAATGCACTCCTTTG
CTAAGTGCATTGAAGTGATGGGAGATGGGTGTCTCAACAATGAACACTTCGAGGAACTGGGAGGTATACTGAAGGCGAAG
CTCGAGGAACATTTCAAAAATCAAGAGTTGCGGCAAGTTAAAAGACAAGATGAAGACTACGACGAACAGGTTGAAGAGTC
GCTACAAGATGAAGATGATAATGATGTTTATATACTGACTAAAGTCTCAGATATTTTACACTCAATATTCAGTAGCTACA
AAGAAAAGGTGTTGCCGTGGTTTGAACAGCTGCTCCCATTAATTGTCAACCTGATTTGTCCACATAGACCCTGGCCAGAC
AGACAATGGGGATTGTGCATCTTCGATGATATCATAGAACACTGTAGTCCAGCTTCATTTAAGTATGCAGAATATTTCTT
AAGGCCAATGCTCCAGTATGTATGTGACAACAGCCCGGAAGTCAGGCAAGCTGCAGCATATGGCCTTGGCGTCATGGCGC
AGTACGGTGGAGATAACTACCGCCCCTTCTGTACAGAAGCACTCCCGCTGCTTGTAAGAGTCATTCAGTCTGCAGATTCT
AAGACCAAAGAAAATGTCAATGCCACAGAGAACTGCATCTCAGCAGTGGGAAAGATCATGAAGTTCAAGCCTGACTGCGT
GAATGTGGAGGAGGTCTTACCACACTGGCTGTCGTGGCTCCCCCTACATGAAGATAAAGAAGAAGCTGTCCAGACCTTCA
GTTACCTGTGTGACCTGATTGAAAGTAATCATCCAATTGTTCTTGGCCCAAATAATACCAATCTACCGAAAATATTCAGT
ATAATTGCAGAAGGAGAAATGCATGAGGCCATCAAACATGAAGACCCCTGTGCCAAACGCCTGGCCAATGTAGTTCGCCA
AGTACAGACTTCTGGAGGATTGTGGACTGAATGCATAGCTCAACTCAGTCCGGAGCAGCAGGCAGCCATACAGGAGCTCC
TGAACTCTGCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 59 .37 RPM
SRP017611_kidney 97 .07 RPM
SRP017611_brain 136 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003784 ortholog_one2one 1 retrogene
retro_amel_3,
Bos taurus ENSBTAG00000039374 ortholog_one2one 1 retrogene
retro_btau_104,
Canis familiaris ENSCAFG00000005561 ortholog_one2one 1 retrogene
retro_cfam_452,
Choloepus hoffmanni ENSCHOG00000006061 ortholog_one2many 1 retrogene
retro_chof_11,
Cavia porcellus ENSCPOG00000004827 ortholog_one2one 2 retrogenes
retro_cpor_265, retro_cpor_57,
Equus caballus ENSECAG00000014808 ortholog_one2one 1 retrogene
retro_ecab_37,
Felis catus ENSFCAG00000025657 ortholog_one2one 1 retrogene
retro_fcat_24,
Homo sapiens ENSG00000065150 ortholog_one2one 1 retrogene
retro_hsap_57,
Gorilla gorilla ENSGGOG00000008742 ortholog_one2one 1 retrogene
retro_ggor_47,
Loxodonta africana ENSLAFG00000016190 ortholog_one2one 1 retrogene
retro_lafr_22,
Myotis lucifugus ENSMLUG00000006500 ortholog_one2one 1 retrogene
retro_mluc_295,
Mus musculus ENSMUSG00000030662 ortholog_one2one 2 retrogenes
retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys ENSNLEG00000007831 ortholog_one2one 2 retrogenes
retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus ENSOCUG00000003898 ortholog_one2one 1 retrogene
retro_ocun_143,
Otolemur garnettii ENSOGAG00000007570 ortholog_one2one 1 retrogene
retro_ogar_169,
Pongo abelii ENSPPYG00000005458 ortholog_one2one 1 retrogene
retro_pabe_172,
Pan troglodytes ENSPTRG00000005984 ortholog_one2one 2 retrogenes
retro_ptro_49, retro_ptro_745,
Pteropus vampyrus ENSPVAG00000004516 ortholog_one2one 1 retrogene
retro_pvam_8,
Sus scrofa ENSSSCG00000009509 ortholog_one2one 1 retrogene
retro_sscr_24,
Ictidomys tridecemlineatus ENSSTOG00000011164 ortholog_one2one 1 retrogene
retro_itri_32,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_240 77.39 100.00
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Download FASTA sequences of all ENSRNOG00000010989 retrocopies