RetrogeneDB ID:

retro_fcat_24

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:D4:34213174..34216492(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSFCAG00000010610
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:IPO5
Ensembl ID:ENSFCAG00000025657
Aliases:None
Description:importin 5 [Source:HGNC Symbol;Acc:6402]


Retrocopy-Parental alignment summary:






>retro_fcat_24
ATGGCGGCGGCCGGGTCTGCAGGGGTACCGGCCACCGTGTCGGGAAAGCAAGAGTTTTACCAGCTTCTGAAGAACCTGAT
CAATCCAAGCTGTATGGTGCGGAGGCAGGCAGAAGAAATCTATGAAAATATTCCAGGTCTGTGTAAGACTACATTCCTCT
TAGATGCTGTCAGAAATAGAAGAGCAGGTTATGAGGTGAGACAAATGGCTGCCGCGCTGCTACGACGGCTTTTGTCCTCT
GGGTTTGAGGAAGTCTATCCAAATCTGCCTTCTGATGTTCAGAGGGACGTCAAGATTGAACTGATACTGGCCGTTAAGTT
AGAAACACATGCTAGCATGAGGAAAAAACTTTGTGATATTTTTGCAGTGCTGGCCAGAAATTTGATAGATGAGGATGGCA
CTAACCACTGGCCTGAAGGTTTGAAGTTCCTTATTGATTCAATCTACTCTAAAAATGTAGTTCTTTGGGAAGTTGCACTT
CACGTTTTCTGGCACTTTCCTGGGATTTTTGGGAACCAAGAGCGGCATGATTTGGATATCATCAAACGTTTGTTGGACCA
GTGCATTCAGGATCAAGAACATCCAGCAATCAGGACATTATCTGCTAGAGCTGCAGCTGCATTTGTACTTGCTAATGAGA
ATAATATTGCTCTTTTCAAGGACTTTGCAGACTTGCTTCCTGGAATCTTACAGGCTGTGAATGACTCATGCTACCAAGAT
GATGATTCAGTGCTAGAATCCCTTGTTGAGATTGCAGATACCGTACCTAAATACCTGGGTCCTTATTTAGAAGATACTCT
GCAGTTGAGTCTGAAGTTATGTGGAGACTCTAGACTTAGTAATCTGCAACGCCAGTTGGCCCTTGAAATAATAGTGACCT
TGTCTGAAACTGCAACCCCAATGTTGAAAAAACATACAAATATAATTGCACAGGCAGTTCCTCATATATTAGCAATGATG
GTTGATCTACAAGATGATGAGGACTGGGTAAATGCCGATGAAATGGAAGAAGATGATTTTGACAGCAATGCCGTTGCTGC
TGAGAGTGCACTAGACAGACTGGCTTGTGGGCTTGGTGGGAAACTTGTTTTACCAATGACTAAGGAGCACATCATGCAGA
TGCTTCAGAGCCCTGACTGGAAATATCGACATGCTGGATTAATGGCCTTATCTGCCATTGGAGAAGGATGCCATCAGCAA
ATGGAATCAATTCTAGATGAAACAGTTAACTCTGTTTTGCTTTTTCTTCAGGATCCTCACCCAAGAGTGAGGGCTGCAGC
CTGTACTACACTTGGGCAGATGGCTACAGATTTTTCTCCTAACTTCCAAAAGAAATTCCATGAAACAGTGATTGCAGCTC
TGTTGCGTACCATGGAAAATCAAGGTAATCAGCGTGTACAATCACATGCGGCTTCTGCACTTATTATTTTTATTGAAGAC
TGTCCGAAAACATTGCTAGTTCTATATTTGGATAGTATGGTGAGAAATCTACATTCCATCTTGGTGATTAAACTTCAAGA
ATTGATTCGGAATGGAACTAAATTGGCCTTGGAACAGCTTGTGACAACCATTGCCTCAGTTGCAGATACAATAGAAGAAA
AATTTGTTCCATATTATGATATATTTATGCCATCACTAAAGCACATTGTTGAGCTTGCTGTTCAGAAGGAACTCAAGCTT
CTGAAAGGAAAAACTATTGAATGCATTAGCCATGTTGGTCTTGCTGTTGGGAAGGAAAAATTTATGCAAGATGCATCAAA
TGTGATGCAGCTATTGTTGAAGACACAATCAGACTTGAATAATATGGAAGATGATGACCCTCAGACATCTTACATGGTTT
CAGCATGGGCTAGAATGTGTAAAATTCTTGGAAGTGATTTTCAACAGTACCTTCCACTAGTTATTGAGCCTCTTATTAAG
ACTGCTTCAGCTAAACCTGATGTTGCTCTCTTAGACACACAAGATGTGGAAAATATGAGTGATGATGATGGATGGCAATT
TGTAAATCTTGGAGACCAACAAAGTTTTGGAATTAAGACTTCAGGACTTGAAGCAAAAGCAACTGCTTGCCAGATGTTGG
TTTACTATGCTAAGGAGTTAAGGGAAGGATTTGTGGAATATACAGAACAGGTTGTAAAGCTGATGGTTCCTTTATTGAAA
TTTTATTTCCATGACAATGTTCGAGTGGCAGCAGCAGAGTCTATGCCTTTTCTCCTGGAATGTGCAAGAACTCGTGGCCC
AGAATATCTTGCACAGATGTGGCAATTCATATGTGATCCCTTAATCAAGGCTATTGGGACTGAACCTGATACAGATGTAC
TCTCAGAAATAATGAATTCTTTTGCAAAGTCCATTGAAGTAATGGGAGATGGGTGCCTTCTTGATGAACACTTAGAAGAA
CTAGGAGAAATATTGAAAGCAAAACTTGAAGGACACTTTAAAAACCAAGAACTGAGACAGGTTAAAAGACGGGAAGAAAA
CTACGACCAGCAGGTTGAAATGTCTCTGCAAGATGAGGATGAATGTGATGTTTATATTCTGACCAAAGTATCAGATATTT
TGCACTCATTATTTAGTACTTACAAGGAAAAGATTTTACCATGGTTTGAACAGCTTCTTCCATTAATTGTAAATCTAATT
TGTTCGAATAGGCCATGGCCAGATAGACAGTGGGGATTGTGCATATTTGATGATATTATAGAGCACTGCAGTCCAACCTC
ATATAAGTATGTAGAATATTTTCGGTGGCCAATGCTACTAAATATGCGAGATAACAACCCTGAAGTCAGGCAAGCAGCTG
CTTATGGCCTGGGTGTTATGGCACAGTTTGGTGGAGATGATTATCGTTCTTTATGTTCAGAAGCTGTCCCATTGCTGGTA
AAAGTTATTAAGTGTGCAAATTCCAAAACCAAAAAACATGTCATTGCTACAGAGAACTGTATCTCAGCAGTAGGGAAGAT
TTTGAGGTTTAAGCCTAACTGTGTAAATGTAGATGAAGTTCTTCCACATTGGTTATCATGGCTTCCACTGCATGAGGATA
AAGAGGAAGCTATTCAGACTTTGAGTTTTCTCTGTGATTTAATTGAAAGTAACCACCCAGTTGTACTTGGTCCAAATAAT
TCCAATCTTCCCAAAATAATCAGTATAATTGCAGAAGGAAAAATTAATGAGACTATTAATTATGAAGATCCTTGTGCTAA
ACGCCTAGCTAATGTTGTGCGTCAGGTACAGACTTCTGAAGAATTATGGTTGGAATGTATATCGCAACTTGATGAGGAGC
AGCAGGAAGCTCTACAAGAGTTGCTAAATTTTGCTTGA

ORF - retro_fcat_24 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.69 %
Parental protein coverage: 64.75 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEYFLFFLGFTSSEHVAQKQKKETYENIPGQSKITFLLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYP
E.................Q..E.YENIPG..K.TFLL.A.RN..A..E.RQMAA.LLRRLLSS.F.EVYP
RetrocopyEFYQLLKNLINPSCMVRRQAEEIYENIPGLCKTTFLLDAVRNRRAGYEVRQMAAALLRRLLSSGFEEVYP
ParentalTLPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNG-LRE
.LPSDVQ...K.EL......ET..SMRKK.CDI.A.LARNLIDEDG.N.WPEGLKFL.DS..S.N..L.E
RetrocopyNLPSDVQRDVKIELILAVKLETHASMRKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSIYSKNVVLWE
ParentalAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSARATAAFILANEHNVALFKHFADLLP
.ALH.FW.FPGIFGNQ..H.LD.IKR.L.QC.QDQEHP.IRTLSARA.AAF.LANE.N.ALFK.FADLLP
RetrocopyVALHVFWHFPGIFGNQERHDLDIIKRLLDQCIQDQEHPAIRTLSARAAAAFVLANENNIALFKDFADLLP
ParentalGFLQAVNDSCYQNDDSVLKSLVEIADTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQLALEVIVTLSET
G.LQAVNDSCYQ.DDSVL.SLVEIADTVPKYL.P.LE.TLQLSLKLCGD..L.N.QRQLALE.IVTLSET
RetrocopyGILQAVNDSCYQDDDSVLESLVEIADTVPKYLGPYLEDTLQLSLKLCGDSRLSNLQRQLALEIIVTLSET
ParentalAAAMLRKHTNIVAQTIPQMLAMMVDLEEDEDWANADELEDDDFDSNAVAGESALDRMACGLGGKLVLPMI
A..ML.KHTNI.AQ..P..LAMMVDL..DEDW.NADE.E.DDFDSNAVA.ESALDR.ACGLGGKLVLPM.
RetrocopyATPMLKKHTNIIAQAVPHILAMMVDLQDDEDWVNADEMEEDDFDSNAVAAESALDRLACGLGGKLVLPMT
ParentalKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAACNAVGQMATD
KEHIMQMLQ.PDWKYRHAGLMALSAIGEGCHQQME.IL.E.VN.VLLFLQDPHPRVR.AAC...GQMATD
RetrocopyKEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQQMESILDETVNSVLLFLQDPHPRVRAAACTTLGQMATD
ParentalFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQE
F.P.FQKKFHE.VIAALL.TME.QGNQRVQ.HAA.ALI.F.EDCPK.LL..YLD..V..LHSI.V.KLQE
RetrocopyFSPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALIIFIEDCPKTLLVLYLDSMVRNLHSILVIKLQE
ParentalLIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVG
LI..GTKL.LEQ.VT.IASVADT.EEKFVPYYD.FMPSLKHIVE.AVQKEL.LL.GKTIECIS..GLAVG
RetrocopyLIRNGTKLALEQLVTTIASVADTIEEKFVPYYDIFMPSLKHIVELAVQKELKLLKGKTIECISHVGLAVG
ParentalKEKFMQDASDVMQLLLKTQTDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPE
KEKFMQDAS.VMQLLLKTQ.D...MEDDDPQ.SYM.SAWARMCKILG..FQQYLP.V..PL.KTAS.KP.
RetrocopyKEKFMQDASNVMQLLLKTQSDLNNMEDDDPQTSYMVSAWARMCKILGSDFQQYLPLVIEPLIKTASAKPD
ParentalVALLDTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMVP
VALLDTQD.ENMSDDDGW.FVNLGDQQSFGIKT.GLE.K.TACQMLV.YAKEL.EGFVEYTEQVVKLMVP
RetrocopyVALLDTQDVENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFVEYTEQVVKLMVP
ParentalLLKFYFHDDILI
LLKFYFHD....
RetrocopyLLKFYFHDNVRV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 60 .49 RPM 163 .78 RPM
SRP017611_kidney 8 .76 RPM 147 .06 RPM
SRP017611_liver 5 .26 RPM 132 .93 RPM

ChIP-Seq - click to see more details

Felis catus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_fcat_24 retrocopy.

TSS - click to see more details

Felis catus was not studied using FANTOM5 data.

Lab - click to see more details

retro_fcat_24 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000037841 retrocopy
retro_amel_3,
Bos taurus ENSBTAG000000393741 retrocopy
retro_btau_104,
Canis familiaris ENSCAFG000000055611 retrocopy
retro_cfam_452,
Choloepus hoffmanni ENSCHOG000000060611 retrocopy
retro_chof_11,
Cavia porcellus ENSCPOG000000048272 retrocopies
retro_cpor_265, retro_cpor_57,
Equus caballus ENSECAG000000148081 retrocopy
retro_ecab_37,
Felis catus ENSFCAG00000025657 1 retrocopy
retro_fcat_24 ,
Homo sapiens ENSG000000651501 retrocopy
retro_hsap_57,
Gorilla gorilla ENSGGOG000000087421 retrocopy
retro_ggor_47,
Loxodonta africana ENSLAFG000000161901 retrocopy
retro_lafr_22,
Myotis lucifugus ENSMLUG000000065001 retrocopy
retro_mluc_295,
Mus musculus ENSMUSG000000306622 retrocopies
retro_mmus_251, retro_mmus_3683,
Nomascus leucogenys ENSNLEG000000078312 retrocopies
retro_nleu_1610, retro_nleu_2482,
Oryctolagus cuniculus ENSOCUG000000038981 retrocopy
retro_ocun_143,
Otolemur garnettii ENSOGAG000000075701 retrocopy
retro_ogar_169,
Pongo abelii ENSPPYG000000054581 retrocopy
retro_pabe_172,
Pan troglodytes ENSPTRG000000059842 retrocopies
retro_ptro_49, retro_ptro_745,
Pteropus vampyrus ENSPVAG000000045161 retrocopy
retro_pvam_8,
Rattus norvegicus ENSRNOG000000109891 retrocopy
retro_rnor_240,
Sus scrofa ENSSSCG000000095091 retrocopy
retro_sscr_24,
Ictidomys tridecemlineatus ENSSTOG000000111641 retrocopy
retro_itri_32,




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