Parental gene:

RNPS1, ENSPTRG00000031310

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:16:2315105..2330640(-)


>ENSPTRG00000031310
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCTTC
ACCTACCAAACGCAAAGACCGCTCAGATGAGAAGTCCAAGGATCGCTCAAAAGATAAAGGGACCACCAAGGAGTCGAGTG
AGAAGGATCGCGGCCGGGACAAAACCCGAAAGAGGCGCAGCGCTTCCAGTGGTAGCAGCAGTACCAGGTCTCGGTCCAGC
TCGACTTCCAGCTCAGGCTCCAGCACCAGCACTGGCTCAAGCAGTGGCTCCAGCTCTTCCTCAGCATCCAGCCGCTCAGG
AAGCTCCAGCACCTCCCGCAGCTCCAGCTCTAGCAGCTCTTCTGGCTCTCCAAGTCCTTCTCGGCGCAGACACGACAACA
GGAGGCGCTCCCGCTCCAAATCCAAACCACCTAAAAGAGATGAAAAGGAGAGGAAAAGGCGGAGCCCATCTCCTAAGCCC
ACCAAAGTGCACATTGGGAGACTCACCAGGAATGTGACAAAGGATCACATCATGGAGATATTTTCCACCTATGGGAAAAT
TAAAATGATTGACATGCCCGTGGAAAGGATGCATCCCCATCTGTCCAAAGGCTATGCGTACGTAGAGTTTGAGAATCCAG
ATGAAGCTGAGAAGGCGCTGAAGCACATGGATGGAGGACAAATTGATGGCCAGGAGATCACTGCCACCGCCGTGCTGGCC
CCCTGGCCTAGGCCACCCCCCAGGAGATTCAGCCCTCCCAGGAGAATGTTGCCACCACCGCCTATGTGGCGCAGGTCTCC
CCCACGGATGAGGAGAAGGTCCCGCTCCCCGAGGCGCAGGTCCCCCGTGCGCCGGAGATCACGGTCCCCGGGCCGCCGCC
GCCACAGGAGCCGCTCCAGCTCCAACTCCTCCCGATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 73 .16 RPM
SRP007412_cerebellum 61 .09 RPM
SRP007412_heart 20 .23 RPM
SRP007412_kidney 37 .42 RPM
SRP007412_liver 24 .78 RPM
SRP007412_testis 40 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004866 ortholog_one2one 4 retrogenes
retro_chof_1587, retro_chof_1985, retro_chof_2272, retro_chof_493,
Cavia porcellus ENSCPOG00000002066 ortholog_one2one 2 retrogenes
retro_cpor_363, retro_cpor_953,
Equus caballus ENSECAG00000023288 ortholog_one2one 1 retrogene
retro_ecab_524,
Gorilla gorilla ENSGGOG00000014275 possible_ortholog 1 retrogene
retro_ggor_2016,
Macropus eugenii ENSMEUG00000008882 ortholog_one2one 1 retrogene
retro_meug_1996,
Monodelphis domestica ENSMODG00000015891 ortholog_one2one 1 retrogene
retro_mdom_1171,
Otolemur garnettii ENSOGAG00000031582 ortholog_one2one 1 retrogene
retro_ogar_3241,
Pteropus vampyrus ENSPVAG00000005105 ortholog_one2one 1 retrogene
retro_pvam_296,
Rattus norvegicus ENSRNOG00000008703 ortholog_one2one 4 retrogenes
retro_rnor_1537, retro_rnor_2135, retro_rnor_2988, retro_rnor_649,
Sarcophilus harrisii ENSSHAG00000016951 ortholog_one2one 1 retrogene
retro_shar_390,
Ictidomys tridecemlineatus ENSSTOG00000013200 ortholog_one2one 1 retrogene
retro_itri_1160,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1967 93.13 95.08
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Download FASTA sequences of all ENSPTRG00000031310 retrocopies