Parental gene: | RNPS1, ENSCPOG00000002066 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_4:22343967..22349137(-) |
>ENSCPOG00000002066
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCTTC
TCCTACCAAACGAAAGGACCGCTCTGATGAGAAGTCCAAGGATCGCTCTAAAGACAAAGGAACCACCAAGGAGTCTAGTG
AGAAGGACCGCGGCAGGGATAAGACCCGAAAGAGACGCAGTGCTTCCAGTGGAAGCAGCAGCACCAGGTCTCGGTCCAGC
TCAACTTCCAGTTCAGGCTCTAGCACCAGCACGGGCTCAAGCAGTGGCTCCAGTTCCTCTTCAGCATCTAGCCGCTCTGG
AAGCTCCAGTACATCTCGAAGCTCCAGTTCCAGCAGCTCCTCTGGCTCCCCAAGCCCTTCTCGACGCAGACATGACAACA
GGCGGCGTTCCCGCTCCAAATCCAAACCACCTAAAAGAGATGAAAAGGAGAGGAAAAGGCGAAGCCCTTCTCCTAAACCT
ACCAAAGTGCACATTGGAAGACTTACCAGGAATGTGACAAAGGATCACATCATGGAGATATTTTCTACCTACGGGAAAAT
TAAAATGATTGACATGCCTGTAGAAAGGATGCATCCTCATCTGTCCAAAGGCTATGCATATGTGGAGTTTGAGAACCCAG
ATGAAGCTGAGAAAGCACTGAAGCACATGGATGGAGGACAAATTGATGGTCAAGAGATCACCGCTACTGCTGTGCTGGCC
CCCTGGCCTAGACCGCCTCCCCGTCGATTCAGCCCTCCCAGGAGAATGCTACCACCACCTCCTATGTGGCGTAGGTCACC
TCCACGGATGAGAAGAAGGTCACGCTCCCCAAGACGCAGGTCTCCCGTACGCAGGCGGTCCCGTTCTCCTGGCCGCCGCC
GCCATAGGAGCCGCTCTAGCTCCAATTCTTCCCGA
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTAGGGCTCCTTC
TCCTACCAAACGAAAGGACCGCTCTGATGAGAAGTCCAAGGATCGCTCTAAAGACAAAGGAACCACCAAGGAGTCTAGTG
AGAAGGACCGCGGCAGGGATAAGACCCGAAAGAGACGCAGTGCTTCCAGTGGAAGCAGCAGCACCAGGTCTCGGTCCAGC
TCAACTTCCAGTTCAGGCTCTAGCACCAGCACGGGCTCAAGCAGTGGCTCCAGTTCCTCTTCAGCATCTAGCCGCTCTGG
AAGCTCCAGTACATCTCGAAGCTCCAGTTCCAGCAGCTCCTCTGGCTCCCCAAGCCCTTCTCGACGCAGACATGACAACA
GGCGGCGTTCCCGCTCCAAATCCAAACCACCTAAAAGAGATGAAAAGGAGAGGAAAAGGCGAAGCCCTTCTCCTAAACCT
ACCAAAGTGCACATTGGAAGACTTACCAGGAATGTGACAAAGGATCACATCATGGAGATATTTTCTACCTACGGGAAAAT
TAAAATGATTGACATGCCTGTAGAAAGGATGCATCCTCATCTGTCCAAAGGCTATGCATATGTGGAGTTTGAGAACCCAG
ATGAAGCTGAGAAAGCACTGAAGCACATGGATGGAGGACAAATTGATGGTCAAGAGATCACCGCTACTGCTGTGCTGGCC
CCCTGGCCTAGACCGCCTCCCCGTCGATTCAGCCCTCCCAGGAGAATGCTACCACCACCTCCTATGTGGCGTAGGTCACC
TCCACGGATGAGAAGAAGGTCACGCTCCCCAAGACGCAGGTCTCCCGTACGCAGGCGGTCCCGTTCTCCTGGCCGCCGCC
GCCATAGGAGCCGCTCTAGCTCCAATTCTTCCCGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 22 .68 RPM |
| SRP017611_kidney | 69 .83 RPM |
| SRP017611_brain | 102 .26 RPM |
| SRP040447_lung | 77 .02 RPM |
| SRP040447_skeletal_muscle | 70 .05 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000004866 | ortholog_one2one | 4 retrogenes | |
| Equus caballus | ENSECAG00000023288 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000014275 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000008882 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000015891 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000031582 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000031310 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000005105 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008703 | ortholog_one2one | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000016951 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013200 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_363 | 74.26 | 88.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_953 | 57.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000002066 retrocopies