Parental gene: | SDAD1, ENSPTRG00000024399 |
| Aliases: | None |
| Description: | SDA1 domain containing 1 [Source:HGNC Symbol;Acc:25537] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 4:54083146..54126126(+) |
>ENSPTRG00000024399
ATGTCCAACAGAAACAACAACAAGCTGCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTA
CATCGAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCA
AAGAACTAGCAGAGCTGGTGATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAG
GTGAAAGATCTTCTCTCCTGCAATCATACCGTATTGGATCCAGATCTGCGAATGACATTTTGCAAAGCTTTGATCTTGCT
GAGAAATAAGAATCTCATCAATCCATCAAGCCTGCTAGAACTCTTCTTTGAACTTTTTCGTTGCCATGATAAACTTCTGC
GAAAGACTTTATACACACATATTGTGACTGATATCAAGAATATAAATGCAAAACACAAGAACAATAAAGTGAATGTAGTA
TTGCAAAATTTCATGTACACCATGTTAAGAGATAGCAATGCAACCGCAGCCAAGATGTCTTTAGATGTAATGATTGAACT
CTACAGAAGGAACATCTGGAATGATGCCAAAACTGTCAATGTTATCACAACTGCATGTTTCTCTAAGGTCACCAAGATAT
TAGTTGCCGCTTTGACATTCTTTCTTGGGAAAGATGAAGATGAAAAACAGGACAGTGACTCCGAATCTGAGGATGATGGA
CCAACAGCAAGAGACCTGCTAGTACAATATGCTACAGGGAAGAAAAGTTCCAAAAACAAGAAAAAGTTGGAAAAGGCAAT
GAAAGTGCTCAAGAAACAAAAAAAGAAGAAAAAACCAGAGGTGTTTAACTTTTCAGCCATTCACTTGATTCACGATCCCC
AAGATTTTGCAGAAAAACTACTAAAGCAGCTTGAGTGCTGTAAGGAGAGGTTTGAAGTGAAGATGATGCTCATGAACCTT
ATCTCCAGATTGGTGGGAATTCATGAGCTTTTCCTCTTCAATTTCTATCCCTTTTTGCAAAGGTTTCTGCAGCCCCACCA
AAGAGAAGTAACAAAGATCCTTCTGTTTGCTGCACAAGCATCTCATCACCTAGTACCCCCAGAGATTATTCAATCATTGC
TTATGACTGTGGCAAACAATTTTGTTACCGACAAGAACTCTGGAGAAGTCATGACAGTAGGAATCAATGCTATAAAGGAG
ATAACAGCTCGATGTCCTCTGGCCATGACTGAAGAACTTCTCCAAGACCTGGCTCAGTATAAAACACACAAGGATAAGAA
TGTAATGATGTCTGCTAGAACTTTGATTCACCTCTTCCGAACACTGAATCCTCAGATGCTGCAGAAGAAATTCCGGGGTA
AGCCTACAGAGGCCTCCATAGAAGCAAGAGTACAAGAATATGGAGAATTAGATGCTAAAGATTACATTCCAGGAGCAGAA
GTTCTGGAAGTTGAGAAAGAAGAGAATGCTGAAAATGATGAAGATGGATGGGAAAGTACTAGTCTCAGTGAGGAGGAGGA
TGCTGATGGTGAATGGATTGATGTGCAACACTCTTCCGATGAAGAACAGCAAGAAATCTCCAAGAAGCTGAACAGCATGC
CCATGGAGGAGCGGAAGGCCAAAGCTGCAGCCATCAGCACTAGCCGAGTTTTAACTCAGGAAGACTTCCAGAAAATCCGC
ATGGCCCAAATGAGAAAAGAACTTGATGCTGCCCCCGGGAAATCCCAGAAGAGGAAATACATTGAAATAGACAGTGATGA
AGAGCCCAGGGGTGAATTACTTTCTCTTCGGGACATTGAACGCCTTCATAAAAAGCCAAAGTCTGACAAAGAGACAAGAC
TAGCAACTGCAATGGCTGGAAAGACAGACCGAAAAGAATTTGTGAGGAAGAAAACCAAAACAAATCCATTTTCCAGTTCG
ACAAATAAAGAGAAGAAAAAACAGAAGAACTTTATGATGATGCGGTATAGCCAGAATGTCCGGTCAAAAAATAAGCGTTC
CTTCCGAGAAAAACAGTTGGCACTACGAGATGCACTTTTGAAAAAGAGAAAAAGAATGAAGTAA
ATGTCCAACAGAAACAACAACAAGCTGCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACCCGCCGGCCTA
CATCGAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTGCAACCAAATAAACCCAGCA
AAGAACTAGCAGAGCTGGTGATGTTTATGGCACAGATTAGTCACTGCTACCCAGAGTACCTAAGTAATTTTCCTCAAGAG
GTGAAAGATCTTCTCTCCTGCAATCATACCGTATTGGATCCAGATCTGCGAATGACATTTTGCAAAGCTTTGATCTTGCT
GAGAAATAAGAATCTCATCAATCCATCAAGCCTGCTAGAACTCTTCTTTGAACTTTTTCGTTGCCATGATAAACTTCTGC
GAAAGACTTTATACACACATATTGTGACTGATATCAAGAATATAAATGCAAAACACAAGAACAATAAAGTGAATGTAGTA
TTGCAAAATTTCATGTACACCATGTTAAGAGATAGCAATGCAACCGCAGCCAAGATGTCTTTAGATGTAATGATTGAACT
CTACAGAAGGAACATCTGGAATGATGCCAAAACTGTCAATGTTATCACAACTGCATGTTTCTCTAAGGTCACCAAGATAT
TAGTTGCCGCTTTGACATTCTTTCTTGGGAAAGATGAAGATGAAAAACAGGACAGTGACTCCGAATCTGAGGATGATGGA
CCAACAGCAAGAGACCTGCTAGTACAATATGCTACAGGGAAGAAAAGTTCCAAAAACAAGAAAAAGTTGGAAAAGGCAAT
GAAAGTGCTCAAGAAACAAAAAAAGAAGAAAAAACCAGAGGTGTTTAACTTTTCAGCCATTCACTTGATTCACGATCCCC
AAGATTTTGCAGAAAAACTACTAAAGCAGCTTGAGTGCTGTAAGGAGAGGTTTGAAGTGAAGATGATGCTCATGAACCTT
ATCTCCAGATTGGTGGGAATTCATGAGCTTTTCCTCTTCAATTTCTATCCCTTTTTGCAAAGGTTTCTGCAGCCCCACCA
AAGAGAAGTAACAAAGATCCTTCTGTTTGCTGCACAAGCATCTCATCACCTAGTACCCCCAGAGATTATTCAATCATTGC
TTATGACTGTGGCAAACAATTTTGTTACCGACAAGAACTCTGGAGAAGTCATGACAGTAGGAATCAATGCTATAAAGGAG
ATAACAGCTCGATGTCCTCTGGCCATGACTGAAGAACTTCTCCAAGACCTGGCTCAGTATAAAACACACAAGGATAAGAA
TGTAATGATGTCTGCTAGAACTTTGATTCACCTCTTCCGAACACTGAATCCTCAGATGCTGCAGAAGAAATTCCGGGGTA
AGCCTACAGAGGCCTCCATAGAAGCAAGAGTACAAGAATATGGAGAATTAGATGCTAAAGATTACATTCCAGGAGCAGAA
GTTCTGGAAGTTGAGAAAGAAGAGAATGCTGAAAATGATGAAGATGGATGGGAAAGTACTAGTCTCAGTGAGGAGGAGGA
TGCTGATGGTGAATGGATTGATGTGCAACACTCTTCCGATGAAGAACAGCAAGAAATCTCCAAGAAGCTGAACAGCATGC
CCATGGAGGAGCGGAAGGCCAAAGCTGCAGCCATCAGCACTAGCCGAGTTTTAACTCAGGAAGACTTCCAGAAAATCCGC
ATGGCCCAAATGAGAAAAGAACTTGATGCTGCCCCCGGGAAATCCCAGAAGAGGAAATACATTGAAATAGACAGTGATGA
AGAGCCCAGGGGTGAATTACTTTCTCTTCGGGACATTGAACGCCTTCATAAAAAGCCAAAGTCTGACAAAGAGACAAGAC
TAGCAACTGCAATGGCTGGAAAGACAGACCGAAAAGAATTTGTGAGGAAGAAAACCAAAACAAATCCATTTTCCAGTTCG
ACAAATAAAGAGAAGAAAAAACAGAAGAACTTTATGATGATGCGGTATAGCCAGAATGTCCGGTCAAAAAATAAGCGTTC
CTTCCGAGAAAAACAGTTGGCACTACGAGATGCACTTTTGAAAAAGAGAAAAAGAATGAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 26 .78 RPM |
| SRP007412_cerebellum | 36 .60 RPM |
| SRP007412_heart | 18 .92 RPM |
| SRP007412_kidney | 28 .45 RPM |
| SRP007412_liver | 25 .21 RPM |
| SRP007412_testis | 84 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000008524 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000198301 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000006441 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000012217 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017503 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000027034 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000026953 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014852 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000022229 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000005270 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1388 | 91.21 | 56.04 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2732 | 89.59 | 59.39 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000024399 retrocopies