RetrogeneDB ID:

retro_lafr_980

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_56:2865876..2867104(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SDAD1
Ensembl ID:ENSLAFG00000012217
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lafr_980
AAGGACTTGCTAGTGCAGTATGCCACAGGAAAGAAAAGCTTCAAACACAAGAAAAAGTTGGAAAAGGCTATGAATGTCCT
GAGGAAACAAAAGAAGAAAAACAAAAAAACAAGAGTGTTTAATTTTTCAGCTATTCACTTGATTCATGATCCCCAAGATT
TTGCAGAAAAATTACTAAGGCAGCTATAGAGCTCTAAGGAAAGGCTTGAAGGGAAGATGTAGCTCATGAACCTTGTCTCC
AGATTGGTGGGAATTCATGAGCTTTTTCTCTTTGACTTCTATCTTCTTGTGCCAAGATTCCTGCAGTCCCACCAAACAGA
AGTAACAAAGATCCCTGTTTTCTGGATAAGCATCTTATCACCTGGTAGCTCCGGAATTTATTCAGCCATTGCTCATGACT
GTGGCCAACAATTTTGTTACCAATAAGAACCCTGACAAAGTCATGACAGTAGGAATCAATGCCATAAAAGAGATAACAGC
TCTATATCCTCTAGCCATGACTGAATAACTTCTCCAAGACCTAGCCCAGTAGAAAACATGCAAAGATAAGAATGTGATGA
TGTTCACTAGAGTTCTGATTCAGCTCTTCCAAACACTGACTCCTCAGATGTTACAAGGTAAGCCTATAGAGGCCTCAATA
GAAGCAAGAGTGCAAGAATATGGAGTATTAGATGGTAAAGGTTACATTCCAGGAGCAGAAATTCTGGATGTGGAAAAAGA
GGAAGAGAATGATGAAAATGGGTGGCAAAGTACCAGTCTCAGTGAGGAGGATGCCAATAGTGAATGAGTTGACCTGCACC
ATTCTGATAAAGAACAGCAAGAAATCTCCAAGAAGCTGAACAGCATGCCTGCGGAGGAGCAGAAAGCCAAAGCTGCAGCC
ATCAGTACTAGCCCAGTTTTGACCCAGGAAATCTTCCAAAAAATCCACATGGGCCAACTAAAAAAAGAACTCAGTGCTGC
TCCTGGGGAAAGCAGAGAAAAAAGGAAATATGGTGAAATAGAGAGCAAGAAGGAGCCCAGGGATGAGTTACTTTCACTTT
GGCACCTTGAAAGCATTCATAAAAAGCCGAAGTCTAACAAGGACATAAGTCTAGCAGCTGCAAATGCTGGAAAGGCAGAT
CAAAAAGAATTTGTGAGGAAGAAAAACAGAATGAATCCATTTTCCAGTCCCACAAATAAACAGAAAAAAAACCAAAAGAA
CTTAATGATGATACGGCATAGCCAGAAT

ORF - retro_lafr_980 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.99 %
Parental protein coverage: 60.72 %
Number of stop codons detected: 5
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRDLLVQYATGKKSSKHKKKLEKAMKVLKKQKKK-KKPEVFNFSAIHLIHDPQDFAEKLLKQLESSKERFE
.DLLVQYATGKKS.KHKKKLEKAM.VL.KQKKK.KK..VFNFSAIHLIHDPQDFAEKLL.QL.SSKER.E
RetrocopyKDLLVQYATGKKSFKHKKKLEKAMNVLRKQKKKNKKTRVFNFSAIHLIHDPQDFAEKLLRQL*SSKERLE
ParentalVKMMLMNLTSRLVGIHQLFLFNFYPFIQRFLQPHQREVTKILLFAAQ-ASHHLVPPEIIQSLLMTVANNF
.KM.LMNL.SRLVGIH.LFLF.FY....RFLQ.HQ.EVTKI..F......H...P.E.IQ.LLMTVANNF
RetrocopyGKM*LMNLVSRLVGIHELFLFDFYLLVPRFLQSHQTEVTKIPVFWIS>SYHLVAP-EFIQPLLMTVANNF
ParentalVTDKNSGEVMTVGINAIKEITTRCPLAMTEELLQDLAQYKTHKDKNVMMSARTLIQLFRTLNPQMLHKKF
VT.KN...VMTVGINAIKEIT...PLAMTE.LLQDLAQ.KT.KDKNVMM..R.LIQLF.TL.PQML....
RetrocopyVTNKNPDKVMTVGINAIKEITALYPLAMTE*LLQDLAQ*KTCKDKNVMMFTRVLIQLFQTLTPQML----