Parental gene:

ATG12, ENSPTRG00000017154

Aliases:None
Description:Pan troglodytes ATG12 autophagy related 12 homolog (ATG12), mRNA. [Source:RefSeq mRNA;Acc:NM_001251998]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:116335540..116345622(-)


>ENSPTRG00000017154
ATGACTAGCCGGGAACACCAAGTTTCACTGTGTAATTGCGTCCCCCTACTCCGGCGCCTCCTTTGCGACGCTCCCTGGAG
AAAAGCACGCCCACTGCACGCGCTCAGTCGCTACTTCCGCTCTCGAGTCTTTCCAAGCAAGATGGCGGAGGAGCCGCAGT
CTGTGTTGCAGCTTCCTCCCTCAAGTGCTGCTGGAGGGGAAGGACTTACGGATGTCTCCCCAGAAACAACCACCCCGGAG
CCCCCGTCTTCCGCTGCAGTTTCCCCGGGAACAGAGGAACCTGCTGGCGACACCAAGAAAAAAATTGACATTTTGCTAAA
GGCTGTGGGAGACACTCCTATTATGAAAACAAAGAAGTGGGCAGTAGAGCGAACACGAACCATCCAAGGACTCATTGACT
TCATCAAAAAGTTTCTTAAACTTGTGGCCTCAGAACAGTTGTTTATTTATGTGAATCAGTCCTTTGCTCCTTCCCCAGAC
CAAGAAGTTGGAACTCTCTATGAGTGTTTTGGCAGTGATGGTAAACTGGTTTTACATTACTGCAAGTCTCAGGCGTGGGG
ATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .47 RPM
SRP007412_cerebellum 11 .40 RPM
SRP007412_heart 6 .73 RPM
SRP007412_kidney 8 .39 RPM
SRP007412_liver 11 .36 RPM
SRP007412_testis 9 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004464 ortholog_one2one 1 retrogene
retro_chof_1745,
Cavia porcellus ENSCPOG00000007187 ortholog_one2one 2 retrogenes
retro_cpor_865, retro_cpor_944,
Equus caballus ENSECAG00000012452 ortholog_one2one 1 retrogene
retro_ecab_883,
Echinops telfairi ENSETEG00000018837 ortholog_one2one 1 retrogene
retro_etel_1721,
Homo sapiens ENSG00000145782 ortholog_one2one 1 retrogene
retro_hsap_1860,
Gorilla gorilla ENSGGOG00000016888 ortholog_one2one 2 retrogenes
retro_ggor_1814, retro_ggor_2150,
Loxodonta africana ENSLAFG00000015307 ortholog_one2one 1 retrogene
retro_lafr_450,
Myotis lucifugus ENSMLUG00000002759 ortholog_one2one 1 retrogene
retro_mluc_2259,
Pongo abelii ENSPPYG00000015699 ortholog_one2one 3 retrogenes
retro_pabe_1518, retro_pabe_1519, retro_pabe_2158,
Rattus norvegicus ENSRNOG00000000157 ortholog_one2one 1 retrogene
retro_rnor_2811,
Ictidomys tridecemlineatus ENSSTOG00000011755 ortholog_one2many 1 retrogene
retro_itri_156,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1240 92.41 77.54
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2. retro_ptro_1748 53.24 71.66
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Download FASTA sequences of all ENSPTRG00000017154 retrocopies