Parental gene:

ATG12, ENSECAG00000012452

Aliases:None
Description:autophagy related 12 [Source:HGNC Symbol;Acc:588]
Organism:Horse (Equus caballus)
Coordinates:14:56827284..56838507(+)


>ENSECAG00000012452
ATGGCTGAGGAGCCGGAGTCCGCGCTGCAGCTTTCTCCCTCGACTGCGGCTGATGGCGAAGGACCTACGGAGGTTTCCCC
AGAAACGGCCACTCCGGAGCCCCCCTCTTCCGCTGCAGTCTCGCCGGGAACAGAGGAGCCTGCCGGCGACACCAAAAAAA
AAATTGACATCCTGCTAAAGGCTGTGGGAGACACCCCTATAATGAAAACAAAGAAGTGGGCTGTAGAGCGAACCCGAACC
ATCCAAGGACTCATTGACTTCATCAAAAAGTTCCTAAAACTTGTGGCCTCAGAACAGTTGTTTATTTATGTGAATCAGTC
CTTTGCCCCCTCCCCAGACCAGGAAGTTGGAACCCTCTATGAGTGTTTTGGCAGTGATGGTAAACTGGTCCTGCATTACT
GCAAATCTCAGGCATGGGGATGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 6 .84 RPM
SRP021940_embryo 12 .61 RPM
SRP021940_cerebellum 12 .31 RPM
SRP021940_testis 12 .85 RPM
SRP021940_placental_villous 7 .65 RPM
SRP021940_articular_cartilage 7 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004464 ortholog_one2one 1 retrogene
retro_chof_1745,
Cavia porcellus ENSCPOG00000007187 ortholog_one2one 2 retrogenes
retro_cpor_865, retro_cpor_944,
Echinops telfairi ENSETEG00000018837 ortholog_one2one 1 retrogene
retro_etel_1721,
Homo sapiens ENSG00000145782 ortholog_one2one 1 retrogene
retro_hsap_1860,
Gorilla gorilla ENSGGOG00000016888 ortholog_one2one 2 retrogenes
retro_ggor_1814, retro_ggor_2150,
Loxodonta africana ENSLAFG00000015307 ortholog_one2one 1 retrogene
retro_lafr_450,
Myotis lucifugus ENSMLUG00000002759 ortholog_one2one 1 retrogene
retro_mluc_2259,
Pongo abelii ENSPPYG00000015699 ortholog_one2one 3 retrogenes
retro_pabe_1518, retro_pabe_1519, retro_pabe_2158,
Pan troglodytes ENSPTRG00000017154 ortholog_one2one 2 retrogenes
retro_ptro_1240, retro_ptro_1748,
Rattus norvegicus ENSRNOG00000000157 ortholog_one2one 1 retrogene
retro_rnor_2811,
Ictidomys tridecemlineatus ENSSTOG00000011755 ortholog_one2many 1 retrogene
retro_itri_156,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_883 78.40 87.86
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Download FASTA sequences of all ENSECAG00000012452 retrocopies