Parental gene:

OXCT1, ENSPTRG00000016829

Aliases:None
Description:Succinyl-CoA:3-ketoacid-coenzyme A transferase [Source:UniProtKB/TrEMBL;Acc:H2QQT8]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:73230624..73378664(+)


>ENSPTRG00000016829
ATGGCGGCTCTCAAACTCCTCTCCTCCGGGCTTCGGCTCTGCGCCTCTGCCCGCGGATCTAGGGGAACCTGGTACAAGGG
ATGTGTTTGTTCCTTTTCCACCAGTGCTCATCGCCATACCAAGTTTTATACAGATCCAGTAGAAGCTGTAAAAGACATCC
CTGATGGTGCCACGGTTTTGGTTGGTGGTTTTGGGCTATGTGGAATTCCAGAGAATCTTATAGATGCTTTACTGAAAACT
GGAGTAAAAGGACTAACTGCAGTCAGCAACAATGCAGGGGTTGACAATTTTGGTTTGGGGCTTTTGCTTCGGTCCAAGCA
GATAAAACGCATGATCTCTTCATATGTGGGAGAAAATGCAGAATTTGAACGACAGTACTTATCTGGTGAATTAGAAGTGG
AGCTGACACCACAGGGCACACTTGCAGAGAGGATCCGTGCAGGTGGGGCTGGAGTTCCTGCATTTTACACCCCAACAGGG
TATGGGACCCTGGTACAAGAAGGAGGATCGCCCATCAAATACAACAAAGATGGCAGTGTTGCCATTGCCAGTAAGCCAAG
AGAGGTGAGGGAGTTCAATGGTCAGCACTTTATTTTGGAGGAAGCAATTACAGGGGATTTTGCTTTGGTGAAAGCCTGGA
AGGCGGACCGAGCAGGAAACGTGATTTTCAGGAAAAGTGCAAGGAATTTCAACTTGCCAATGTGCAAAGCTGCAGAAACC
ACAGTGGTAGAGGTTGAAGAAATTGTGGATATTGGAGCATTTGCTCCAGAAGACATCCATATTCCTCAGATTTATGTACA
TCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGCGTTTATCAATCCGGAAAGAGGGAGATGGGGAAGCCAAAT
CTGCTAAACCTGGAGATGACGTAAGGGAACGAATCATCAAGAGGGCCGCTCTTGAGTTTGAGGATGGCATGTATGCTAAT
TTGGGCATAGGAATCCCTCTCCTGGCCAGCAATTTTATCAGCCCAAATATAACTGTTCATCTTCAAAGTGAAAATGGAGT
TCTGGGTTTGGGTCCATATCCACGACAACATGAAGCTGATGCAGATCTCATCAATGCAGGCAAGGAAACAGTTACTATTC
TTCCAGGAGCCTCTTTTTTCTCCAGCGATGAATCATTTGCAATGATTAGAGGTGGACACGTCAATCTCACAATGCTAGGA
GCGATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATACCTGGGAAGATGGTGAAAGGAATGGGAGGTGCTAT
GGATTTAGTGTCCAGTGCCAAAACCAAAGTGGTGGTCACCATGGAGCATTCTGCAAAGGGAAATGCACATAAAATCATGG
AGAAATGTACATTACCATTGACTGGAAAGCAATGTGTCAACCGCATTATTACTGAAAAGGCTGTGTTTGATGTGGACAAG
AAGAAAGGGTTGACTCTGATTGAGCTCTGGGAAGGCCTGACAGTGGATGACGTACAGAAGAGTACTGGGTGTGATTTTGC
AGTTTCACCAAAACTCATGCCAATGCAGCAGATCGCAAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 61 .35 RPM
SRP007412_cerebellum 92 .74 RPM
SRP007412_heart 207 .52 RPM
SRP007412_kidney 260 .89 RPM
SRP007412_liver 1 .60 RPM
SRP007412_testis 16 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033186 ortholog_one2one 2 retrogenes
retro_btau_1243, retro_btau_1302,
Dipodomys ordii ENSDORG00000016318 ortholog_one2one 1 retrogene
retro_dord_282,
Equus caballus ENSECAG00000018312 ortholog_one2one 1 retrogene
retro_ecab_511,
Homo sapiens ENSG00000083720 ortholog_one2one 1 retrogene
retro_hsap_14,
Gorilla gorilla ENSGGOG00000025087 ortholog_one2one 1 retrogene
retro_ggor_378,
Myotis lucifugus ENSMLUG00000009431 ortholog_one2many 1 retrogene
retro_mluc_194,
Nomascus leucogenys ENSNLEG00000016656 ortholog_one2one 1 retrogene
retro_nleu_2438,
Oryctolagus cuniculus ENSOCUG00000009231 ortholog_one2one 1 retrogene
retro_ocun_672,
Otolemur garnettii ENSOGAG00000009909 ortholog_one2one 2 retrogenes
retro_ogar_2773, retro_ogar_2781,
Pongo abelii ENSPPYG00000015428 ortholog_one2one 2 retrogenes
retro_pabe_336, retro_pabe_478,
Rattus norvegicus ENSRNOG00000043094 ortholog_one2one 2 retrogenes
retro_rnor_2177, retro_rnor_2256,
Ictidomys tridecemlineatus ENSSTOG00000008271 ortholog_one2one 1 retrogene
retro_itri_747,
Tarsius syrichta ENSTSYG00000013641 ortholog_one2one 1 retrogene
retro_tsyr_1455,
Tursiops truncatus ENSTTRG00000004331 ortholog_one2one 1 retrogene
retro_ttru_875,
Vicugna pacos ENSVPAG00000002550 ortholog_one2one 1 retrogene
retro_vpac_556,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_140 74.42 99.81
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Download FASTA sequences of all ENSPTRG00000016829 retrocopies