Parental gene:

OXCT1, ENSG00000083720

Aliases:OXCT1, OXCT, SCOT
Description:3-oxoacid CoA transferase 1 [Source:HGNC Symbol;Acc:8527]
Organism:Human (Homo sapiens)
Coordinates:5:41730166..41870621(-)


>ENSG00000083720
ATGGCGGCTCTCAAACTCCTCTCCTCCGGGCTTCGGCTCTGCGCCTCTGCCCGCGGATCTGGGGCAACCTGGTACAAGGG
ATGTGTTTGTTCCTTTTCCACCAGTGCTCATCGCCATACCAAGTTTTATACAGATCCAGTAGAAGCTGTAAAAGACATCC
CTGATGGTGCCACGGTTTTGGTTGGTGGTTTTGGGCTATGTGGAATTCCAGAGAATCTTATAGATGCTTTACTGAAAACT
GGAGTAAAAGGACTAACTGCAGTCAGCAACAATGCAGGGGTTGACAATTTTGGTTTGGGGCTTTTGCTTCGGTCCAAGCA
GATAAAACGCATGGTCTCTTCATATGTGGGAGAAAATGCAGAATTTGAACGACAGTACTTATCTGGTGAATTAGAAGTGG
AGCTGACACCACAGGGCACACTTGCAGAGAGGATCCGTGCAGGCGGGGCTGGAGTTCCTGCATTTTACACCCCAACAGGG
TATGGGACCCTGGTACAAGAAGGAGGATCGCCCATCAAATACAACAAAGATGGCAGTGTTGCCATTGCCAGTAAGCCAAG
AGAGGTGAGGGAGTTCAATGGTCAGCACTTTATTTTGGAGGAAGCAATTACAGGGGATTTTGCTTTGGTGAAAGCCTGGA
AGGCGGACCGAGCAGGAAACGTGATTTTCAGGAAAAGTGCAAGGAATTTCAACTTGCCAATGTGCAAAGCTGCAGAAACC
ACAGTGGTAGAGGTTGAAGAAATTGTGGATATTGGAGCATTTGCTCCAGAAGACATCCATATTCCTCAGATTTATGTACA
TCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAGCGTTTATCAATCCGGAAAGAGGGAGATGGGGAAGCCAAAT
CTGCTAAACCTGGAGATGACGTAAGGGAACGAATCATCAAGAGGGCCGCTCTTGAGTTTGAGGATGGCATGTATGCTAAT
TTGGGCATAGGAATCCCTCTCCTGGCCAGCAATTTTATCAGCCCAAATATAACTGTTCATCTTCAAAGTGAAAATGGAGT
TCTGGGTTTGGGTCCATATCCACGACAACATGAAGCTGATGCAGATCTCATCAATGCAGGCAAGGAAACAGTTACTATTC
TTCCAGGAGCCTCTTTTTTCTCCAGCGATGAATCATTTGCAATGATTAGAGGTGGACACGTCGATCTGACAATGCTAGGA
GCGATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATACCTGGGAAGATGGTGAAAGGAATGGGAGGTGCTAT
GGATTTAGTGTCCAGTGCGAAAACCAAAGTGGTGGTCACCATGGAGCATTCTGCAAAGGGAAATGCACATAAAATCATGG
AGAAATGTACATTACCATTGACTGGAAAGCAATGTGTCAACCGCATTATTACTGAAAAGGCTGTGTTTGATGTGGACAAG
AAGAAAGGGTTGACTCTGATTGAGCTCTGGGAAGGCCTGACAGTGGATGACGTACAGAAGAGTACTGGGTGTGATTTTGC
AGTTTCACCAAAACTCATGCCAATGCAGCAGATCGCAAATTGA

Library Parental gene expression (RPM)
bodymap2_liver 1 .03 RPM
bodymap2_lung 12 .38 RPM
bodymap2_breast 110 .66 RPM
bodymap2_adipose 27 .17 RPM
bodymap2_adrenal 35 .96 RPM
bodymap2_skeletal_muscle 29 .79 RPM
bodymap2_thyroid 71 .75 RPM
bodymap2_prostate 51 .49 RPM
bodymap2_colon 43 .95 RPM
bodymap2_testis 44 .17 RPM
bodymap2_brain 183 .25 RPM
bodymap2_heart 247 .43 RPM
bodymap2_white_blood_cells 28 .59 RPM
bodymap2_lymph_node 28 .80 RPM
bodymap2_ovary 29 .40 RPM
bodymap2_kidney 69 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033186 ortholog_one2one 2 retrogenes
retro_btau_1243, retro_btau_1302,
Dipodomys ordii ENSDORG00000016318 ortholog_one2one 1 retrogene
retro_dord_282,
Equus caballus ENSECAG00000018312 ortholog_one2one 1 retrogene
retro_ecab_511,
Gorilla gorilla ENSGGOG00000025087 ortholog_one2one 1 retrogene
retro_ggor_378,
Myotis lucifugus ENSMLUG00000009431 ortholog_one2many 1 retrogene
retro_mluc_194,
Nomascus leucogenys ENSNLEG00000016656 ortholog_one2one 1 retrogene
retro_nleu_2438,
Oryctolagus cuniculus ENSOCUG00000009231 ortholog_one2one 1 retrogene
retro_ocun_672,
Otolemur garnettii ENSOGAG00000009909 ortholog_one2one 2 retrogenes
retro_ogar_2773, retro_ogar_2781,
Pongo abelii ENSPPYG00000015428 ortholog_one2one 2 retrogenes
retro_pabe_336, retro_pabe_478,
Pan troglodytes ENSPTRG00000016829 ortholog_one2one 1 retrogene
retro_ptro_140,
Rattus norvegicus ENSRNOG00000043094 ortholog_one2one 2 retrogenes
retro_rnor_2177, retro_rnor_2256,
Ictidomys tridecemlineatus ENSSTOG00000008271 ortholog_one2one 1 retrogene
retro_itri_747,
Tarsius syrichta ENSTSYG00000013641 ortholog_one2one 1 retrogene
retro_tsyr_1455,
Tursiops truncatus ENSTTRG00000004331 ortholog_one2one 1 retrogene
retro_ttru_875,
Vicugna pacos ENSVPAG00000002550 ortholog_one2one 1 retrogene
retro_vpac_556,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_14 74.37 99.81
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSG00000083720 retrocopies