Parental gene: | EIF4A1, ENSPTRG00000008694 |
| Aliases: | None |
| Description: | Pan troglodytes eukaryotic translation initiation factor 4A, isoform 1 (EIF4A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098575] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 17:7639396..7645584(+) |
>ENSPTRG00000008694
ATGTCTGCGAGCCAGGATTCCCGATCCAGAGACAATGGCCCCGATGGGATGGAGCCCGAAGGCGTCATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTCGGAGTCCCTTCTCCGTGGTATCTACGCCTATGGTTTTGAGA
AGCCCTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAAGGGTTATGATGTGATTGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAATTAGATCTAAAAGCCACCCAGGCCTTGGTCCTAGC
ACCCACTCGAGAATTGGCTCAGCAGATACAGAAGGTGGTCATGGCATTAGGAGACTACATGGGCGCCTCCTGTCACGCCT
GTATCGGGGGCACCAACGTGCGTGCTGAGGTGCAGAAACTGCAGATGGAAGCTCCCCACATCATCGTGGGTACCCCTGGC
CGTGTGTTTGATATGCTTAACCGGAGATACCTGTCCCCCAAGTACATCAAGATGTTTGTACTGGATGAAGCTGACGAAAT
GTTAAGCCGTGGATTCAAGGACCAGATCTATGACATATTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGCTGTCAG
CCACAATGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCCATTCGGATTCTTGTCAAGAAGGAAGAG
TTGACCCTGGAGGGTATCCGCCAGTTCTACATCAACGTGGAACGAGAGGAGTGGAAGCTGGACACACTATGTGACTTGTA
TGAAACCCTGACCATCACCCAGGCAGTCATCTTCATCAACACCCGGAGGAAGGTGGACTGGCTCACCGAGAAGATGCATG
CTCGAGATTTCACTGTATCCGCCATGCATGGAGATATGGACCAAAAGGAACGAGACGTGATCATGAGGGAGTTTCGTTCT
GGCTCTAGCAGAGTTTTGATTACCACTGACCTGCTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACCAACAGGGAAAACTATATCCACAGAATCGGTCGAGGTGGACGGTTCGGCCGTAAAGGTGTGGCTATTA
ACATGGTGACAGAAGAAGACAAGAGGACTCTTCGAGACATTGAGACCTTTTACAACACCTCCATTGAGGAAATGCCCCTC
AATGTTGCTGACCTCATCTGA
ATGTCTGCGAGCCAGGATTCCCGATCCAGAGACAATGGCCCCGATGGGATGGAGCCCGAAGGCGTCATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGATGACATGAACCTCTCGGAGTCCCTTCTCCGTGGTATCTACGCCTATGGTTTTGAGA
AGCCCTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAAGGGTTATGATGTGATTGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACATTTGCCATATCGATTCTGCAGCAGATTGAATTAGATCTAAAAGCCACCCAGGCCTTGGTCCTAGC
ACCCACTCGAGAATTGGCTCAGCAGATACAGAAGGTGGTCATGGCATTAGGAGACTACATGGGCGCCTCCTGTCACGCCT
GTATCGGGGGCACCAACGTGCGTGCTGAGGTGCAGAAACTGCAGATGGAAGCTCCCCACATCATCGTGGGTACCCCTGGC
CGTGTGTTTGATATGCTTAACCGGAGATACCTGTCCCCCAAGTACATCAAGATGTTTGTACTGGATGAAGCTGACGAAAT
GTTAAGCCGTGGATTCAAGGACCAGATCTATGACATATTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGCTGTCAG
CCACAATGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACCCCATTCGGATTCTTGTCAAGAAGGAAGAG
TTGACCCTGGAGGGTATCCGCCAGTTCTACATCAACGTGGAACGAGAGGAGTGGAAGCTGGACACACTATGTGACTTGTA
TGAAACCCTGACCATCACCCAGGCAGTCATCTTCATCAACACCCGGAGGAAGGTGGACTGGCTCACCGAGAAGATGCATG
CTCGAGATTTCACTGTATCCGCCATGCATGGAGATATGGACCAAAAGGAACGAGACGTGATCATGAGGGAGTTTCGTTCT
GGCTCTAGCAGAGTTTTGATTACCACTGACCTGCTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACCAACAGGGAAAACTATATCCACAGAATCGGTCGAGGTGGACGGTTCGGCCGTAAAGGTGTGGCTATTA
ACATGGTGACAGAAGAAGACAAGAGGACTCTTCGAGACATTGAGACCTTTTACAACACCTCCATTGAGGAAATGCCCCTC
AATGTTGCTGACCTCATCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 108 .23 RPM |
| SRP007412_cerebellum | 114 .43 RPM |
| SRP007412_heart | 90 .88 RPM |
| SRP007412_kidney | 190 .54 RPM |
| SRP007412_liver | 366 .10 RPM |
| SRP007412_testis | 114 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000004900 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000003581 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000024897 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000161960 | ortholog_one2one | 10 retrogenes | |
| Gorilla gorilla | ENSGGOG00000024702 | ortholog_one2one | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000010780 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000003415 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000013499 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000007090 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000059796 | ortholog_one2one | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009547 | ortholog_one2one | 7 retrogenes | |
| Pan troglodytes | ENSPTRG00000015718 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000030628 | ortholog_one2one | 3 retrogenes | |
| Sorex araneus | ENSSARG00000006017 | ortholog_one2one | 7 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000024814 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_450 | 82.98 | 68.97 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_750 | 91.91 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_810 | 89.35 | 94.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_862 | 85.68 | 99.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_870 | 85.55 | 63.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_1201 | 86.06 | 50.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_1465 | 79.23 | 75.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2954 | 82.86 | 59.61 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_3112 | 74.91 | 68.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_3247 | 94.59 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000008694 retrocopies