RetrogeneDB ID:

retro_nleu_2109

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397329.1:1613312..1614530(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000000571
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF4A1
Ensembl ID:ENSNLEG00000009547
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2109
ATGTCTGCAAGTCAGGATTCCCAATCCAAAGACATTGGCCCTGATGGGATGGAGCCCAAAGGTGTCATCGAGAGTAACTG
GAATGAGATTGTTGACAGCTTTGACAACATGAACCTCTTAGAGTCCCTTCTCCGTGGCATCTATGCCTATGGTTTTGAGA
AGCCCTCTGCCATCCAGCAGCGAGCCATTCTACCTTGTATCAAGGGTTATGTTGTGATCGTTCAAGCCCAATCTGGCACT
GGGAAAATGGCCACATTTTCCATATCAGTTCTGCAGCAGATTGAATTAGATCTAAAAGCCACCCAGGCCTTGGTCCTAGC
ACCCACTTGAGAATTGGCTCAGCAGATACAGAAGGTGTTCATGGCACTAGGAGACTACATGGGTGCCTCCTGTCACACCT
GTATTGGGGGCACCAACGTTCATGCTGAGGTACAGAAACTGCAGATGGAAGCTCCCCATATAATTGTGGGTATCCCTGGC
CGTGTGTTTGATATGCTTAACCGGAGATACCTGTCTCCCAAATACATCAAGATGTTTGTACTGGACAAAGCTGATGAAAT
GTTAAGCCATGGATTCAAGGACCAGATCTACGACATATTCCAAAAGCTCAACAGCAACACCCAGGTAGTTTTGCCATCAG
CTACAGTGCCTTCTGATGTGCTTGAGGTGACCAAGAAGTTCATGAGGGACTCCACTTGGATTCTTGTCAAGAAGGAAGAG
TTGACCCTGGAGGGTATCTGCCAATTCTACATCAACATGGAACGAGAAGAGTGGAAGCTGGACACACTGCATGACTTGTA
TGAAACCCTGACCATCATCCAGGCAGTCATCTTCCTCAACACCCGAAGGAAGGTGGACTGGCTTACCGAGAAGATGCACG
CTCAAGATTCCACTGTCTCTGCCATGCATGGAGATATGGACCAAAAGGAAAGAGACGTGATCATGAGGGAGTTTCGTTCT
GGCTGTAGCAGAGTTTTGATTATCACTGACCTGCTGGCCAGAGGCATTGATGTGCAGCAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACCAACAGGGAAAACTATATCCACAGAAACGGTCGAGGTGGACAGTTTGGCCGTAAAAGTGTGGCTATTA
ACATGGTGACAGAAGAAGACAAAAGGACTCTTTGAGACATCGAGACCTTCTACAACACCTTCGTTGAGGAAATGCCCCTC
AATGTTGCTGACCTCATC

ORF - retro_nleu_2109 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.15 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY
MSASQDS.S.D.GPDGMEP.GVIESNWNEIVDSFD.MNL.ESLLRGIYAYGFEKPSAIQQRAILPCIKGY
RetrocopyMSASQDSQSKDIGPDGMEPKGVIESNWNEIVDSFDNMNLLESLLRGIYAYGFEKPSAIQQRAILPCIKGY
ParentalDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV
.VI.QAQSGTGK.ATF.IS.LQQIELDLKATQALVLAPT.ELAQQIQKV.MALGDYMGASCH.CIGGTNV
RetrocopyVVIVQAQSGTGKMATFSISVLQQIELDLKATQALVLAPT*ELAQQIQKVFMALGDYMGASCHTCIGGTNV
ParentalRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV
.AEVQKLQMEAPHIIVG.PGRVFDMLNRRYLSPKYIKMFVLD.ADEMLS.GFKDQIYDIFQKLNSNTQVV
RetrocopyHAEVQKLQMEAPHIIVGIPGRVFDMLNRRYLSPKYIKMFVLDKADEMLSHGFKDQIYDIFQKLNSNTQVV