Parental gene:

THUMPD1, ENSPTRG00000007848

Aliases:None
Description:THUMP domain containing 1 [Source:UniProtKB/TrEMBL;Acc:K7DQV5]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:16:20560494..20565989(-)


>ENSPTRG00000007848
ATGGCGGCTATGCTGCCTCTACTGGATTCAGGTTGCAGTCGGGAGGCGGGGCAGGAGGCGGGGCTTGGGCGGGTATCACT
CCACCCCTTTGACGATTGCAGACCGGCTTTAGGACCTGGCGCAGCACGGAATGAGGCTTCGAGGCGGGCTAGGGGAGGCC
GTCGCTCATATCTGACGTCACCAGCTCGCGCCGGCGATAGACGAGGACGCCAACAGCAGCGGAGAAACGTTTCTCTTTCC
TCTCAGCTTGCGCACACCATGGCGGCCCCTGCCCAGCAGACTACTCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCA
GTATGTGCTGGCCAAGCGCGCTCGGCGCTGCGACGCTGGCGGGCCCCGTCAGCTAGAGCCCGGGCTACAGGGCATCCTCA
TCACCTGCAATATGAACGAGCGCAAGTGCGTGGAGGAGGCCTACAGCCTCCTCAACGAATACGGCGACGACATGTATGGG
CCAGAAAAGTTTACAGACAAGGATCAGCAGCCCTCTGGAAGTGAGGGAGAGGATGATGATGCGGAGGCTGCCTTGAAGAA
AGAAGTTGGTGACATTAAGGCATCTACAGAGATGAGGTTAAGAAGATTCCAGTCAGTGGAAAGTGGAGCAAATAACGTTG
TCTTCATCAGGACACTTGGGATAGAGCCTGAGAAATTGGTGCATCATATTCTCCACGATATGTACAAAACCAAGAAAAAG
AAGACTCGAGTTATTTTGCGAATGTTACCCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCAGA
AACATTTTTGGAACCCTGGTTTAAAGCTCCAAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCATG
TGAATAGAGAAGAAGTTATCAGAGAATTGGCAGGAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCAAT
CCACAGTACACAGTGGTAGTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAA
ATATAATCTCCAGGAGGTGGTGAAGAGCCCTAAGGATCCGTCACAGCTTAACTCAAAGCAGGGAAATGGGAAAGAAGCTA
AACTGGAATCTGCAGACAAATCAGACCAAAACAACACAGCAGAAGGAAAAAATAACCAGCAGGTACCAGCGAATACTGAG
GAGCTGGGGCAGACAAAACCAACGTTTAATCCACAGGTGGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGC
CACAGAAGGATCCAAGTCAAATGAAAATGACTTCTCATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 6 .35 RPM
SRP007412_cerebellum 12 .62 RPM
SRP007412_heart 7 .93 RPM
SRP007412_kidney 14 .96 RPM
SRP007412_liver 5 .14 RPM
SRP007412_testis 15 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009499 ortholog_one2many 1 retrogene
retro_cjac_915,
Cavia porcellus ENSCPOG00000008919 ortholog_one2many 1 retrogene
retro_cpor_71,
Felis catus ENSFCAG00000015158 ortholog_one2one 1 retrogene
retro_fcat_195,
Homo sapiens ENSG00000066654 ortholog_one2one 1 retrogene
retro_hsap_2521,
Gorilla gorilla ENSGGOG00000005231 ortholog_one2one 1 retrogene
retro_ggor_1573,
Macaca mulatta ENSMMUG00000004225 ortholog_one2one 1 retrogene
retro_mmul_1599,
Monodelphis domestica ENSMODG00000006971 ortholog_one2many 1 retrogene
retro_mdom_54,
Nomascus leucogenys ENSNLEG00000012369 ortholog_one2one 1 retrogene
retro_nleu_1443,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1466 85.46 51.48
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Download FASTA sequences of all ENSPTRG00000007848 retrocopies