Parental gene: | THUMPD1, ENSG00000066654 |
| Aliases: | None |
| Description: | THUMP domain containing 1 [Source:HGNC Symbol;Acc:23807] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 16:20744985..20753406(-) |
>ENSG00000066654
ATGGCGGCCCCTGCCCAGCAGACTACTCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGCTGGCCAAGCG
CGCTCGGCGCTGCGACGCTGGCGGGCCCCGTCAGCTAGAGCCCGGGCTACAGGGCATCCTCATCACCTGCAATATGAACG
AGCGCAAGTGCGTGGAGGAGGCCTACAGCCTCCTCAACGAATACGGCGACGACATGTATGGGCCAGAAAAGTTTACAGAC
AAGGATCAGCAGCCCTCTGGAAGTGAGGGAGAGGATGATGATGCGGAGGCTGCCTTGAAGAAAGAAGTTGGTGACATTAA
GGCATCTACAGAGATGAGGTTAAGAAGATTCCAGTCAGTGGAAAGTGGAGCAAATAACGTTGTCTTCATCAGGACACTTG
GGATAGAGCCTGAGAAATTGGTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAAAAGAAGACTCGAGTTATTTTG
CGAATGTTACCCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCAGAAACATTTTTGGAACCCTG
GTTTAAAGCTCCAAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCATGTGAATAGAGAAGAAGTTA
TCAGAGAATTGGCAGGAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCAATCCACAGTACACAGTGGTA
GTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGT
GGTGAAGAGCCCTAAGGATCCGTCACAGCTTAACTCAAAGCAGGGAAATGGGAAAGAAGCTAAACTGGAATCTGCGGACA
AATCAGACCAAAACAACACAGCAGAAGGAAAAAATAACCAGCAGGTACCAGAGAATACTGAGGAGCTGGGGCAGACAAAA
CCAACGTCTAATCCACAGGTGGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTC
AAATGAAAATGACTTCTCATAG
ATGGCGGCCCCTGCCCAGCAGACTACTCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGCTGGCCAAGCG
CGCTCGGCGCTGCGACGCTGGCGGGCCCCGTCAGCTAGAGCCCGGGCTACAGGGCATCCTCATCACCTGCAATATGAACG
AGCGCAAGTGCGTGGAGGAGGCCTACAGCCTCCTCAACGAATACGGCGACGACATGTATGGGCCAGAAAAGTTTACAGAC
AAGGATCAGCAGCCCTCTGGAAGTGAGGGAGAGGATGATGATGCGGAGGCTGCCTTGAAGAAAGAAGTTGGTGACATTAA
GGCATCTACAGAGATGAGGTTAAGAAGATTCCAGTCAGTGGAAAGTGGAGCAAATAACGTTGTCTTCATCAGGACACTTG
GGATAGAGCCTGAGAAATTGGTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAAAAGAAGACTCGAGTTATTTTG
CGAATGTTACCCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCAGAAACATTTTTGGAACCCTG
GTTTAAAGCTCCAAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCATGTGAATAGAGAAGAAGTTA
TCAGAGAATTGGCAGGAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCAATCCACAGTACACAGTGGTA
GTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGT
GGTGAAGAGCCCTAAGGATCCGTCACAGCTTAACTCAAAGCAGGGAAATGGGAAAGAAGCTAAACTGGAATCTGCGGACA
AATCAGACCAAAACAACACAGCAGAAGGAAAAAATAACCAGCAGGTACCAGAGAATACTGAGGAGCTGGGGCAGACAAAA
CCAACGTCTAATCCACAGGTGGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTC
AAATGAAAATGACTTCTCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 22 .37 RPM |
| bodymap2_lung | 41 .63 RPM |
| bodymap2_breast | 59 .24 RPM |
| bodymap2_adipose | 46 .91 RPM |
| bodymap2_adrenal | 63 .97 RPM |
| bodymap2_skeletal_muscle | 27 .66 RPM |
| bodymap2_thyroid | 80 .64 RPM |
| bodymap2_prostate | 89 .08 RPM |
| bodymap2_colon | 65 .10 RPM |
| bodymap2_testis | 81 .41 RPM |
| bodymap2_brain | 43 .48 RPM |
| bodymap2_heart | 30 .66 RPM |
| bodymap2_white_blood_cells | 86 .33 RPM |
| bodymap2_lymph_node | 52 .34 RPM |
| bodymap2_ovary | 101 .67 RPM |
| bodymap2_kidney | 84 .58 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000009499 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000008919 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000015158 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000005231 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000004225 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000006971 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012369 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007848 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2521 | 81.59 | 53.99 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000066654 retrocopies