Parental gene: | THUMPD1, ENSMMUG00000004225 |
| Aliases: | None |
| Description: | THUMP domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001252858] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 20:19596189..19600741(-) |
>ENSMMUG00000004225
ATGGCGGCCCCCGCCCAGTCGACTACGCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGCTGGCCAAGCG
CGCTCGGCGCTGCGACGCTGGCGGGCCCCGTCAGCTAGAGCCCGGGCTACAGGGCATCCTCATCACCTGCAACATGAACG
AGCGCAAGTGCGTGGAAGAGGCCTACAGCCTGCTCAACGAATACGGCGACGACATGTATGGGCCAGAAAAGTTTACAGAC
AAGGATCAGCAGCCCTCTGGAAGTGAGGGAGAGGATGATGATGTGGAGGCTGCCTTGAAGAAAGAAGTTGGTGACATTAA
GGCATCTACAGAGTTGAGGCTAAGAAGATTCCAGTCAGTGGAAAGTGGAGCAAATAACGTCGTCTTCATCAGGACACTTG
GGATAGAACCTGAGAAATTGGTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAGAAGAAGACTCGAGTTATTCTA
CGAATGTTACCCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCACAAACATTTTTGGAACCCTG
GTTTAAAACTCCTAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCATGTGAATAGAGAAGAAGTTA
TCAGAGAATTGGCAGGAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCAATCCACAGTACACGGTGGTA
GTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGT
GGTGAAGAGCCCTAAGGATCCATCACAGCTTAACTCAAAGCAGGGAAATGGGAAAGAAGCTAAATTGGAATCTGCTGACA
AATCAGACCAAAACAACACAGCAGAAGGAAAAAATAACCAGCAGGTACCGGAGAATACTGAAGAGCTGGGGCAGACAAAA
CCAACGTCTAATCCGCAGGTGGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTC
AAATGAAAATGACCTCTCATAG
ATGGCGGCCCCCGCCCAGTCGACTACGCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGCTGGCCAAGCG
CGCTCGGCGCTGCGACGCTGGCGGGCCCCGTCAGCTAGAGCCCGGGCTACAGGGCATCCTCATCACCTGCAACATGAACG
AGCGCAAGTGCGTGGAAGAGGCCTACAGCCTGCTCAACGAATACGGCGACGACATGTATGGGCCAGAAAAGTTTACAGAC
AAGGATCAGCAGCCCTCTGGAAGTGAGGGAGAGGATGATGATGTGGAGGCTGCCTTGAAGAAAGAAGTTGGTGACATTAA
GGCATCTACAGAGTTGAGGCTAAGAAGATTCCAGTCAGTGGAAAGTGGAGCAAATAACGTCGTCTTCATCAGGACACTTG
GGATAGAACCTGAGAAATTGGTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAGAAGAAGACTCGAGTTATTCTA
CGAATGTTACCCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCACAAACATTTTTGGAACCCTG
GTTTAAAACTCCTAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCATGTGAATAGAGAAGAAGTTA
TCAGAGAATTGGCAGGAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCAATCCACAGTACACGGTGGTA
GTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGT
GGTGAAGAGCCCTAAGGATCCATCACAGCTTAACTCAAAGCAGGGAAATGGGAAAGAAGCTAAATTGGAATCTGCTGACA
AATCAGACCAAAACAACACAGCAGAAGGAAAAAATAACCAGCAGGTACCGGAGAATACTGAAGAGCTGGGGCAGACAAAA
CCAACGTCTAATCCGCAGGTGGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTC
AAATGAAAATGACCTCTCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 6 .98 RPM |
| SRP007412_brain | 8 .07 RPM |
| SRP007412_cerebellum | 9 .04 RPM |
| SRP007412_heart | 6 .60 RPM |
| SRP007412_kidney | 12 .21 RPM |
| SRP007412_liver | 3 .40 RPM |
| SRP007412_testis | 10 .37 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000009499 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000008919 | ortholog_many2many | 1 retrogene | |
| Felis catus | ENSFCAG00000015158 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000066654 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000005231 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000006971 | ortholog_many2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012369 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007848 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_1599 | 81.07 | 58.36 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000004225 retrocopies