Parental gene:

ENSPTRG00000007228

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:15:66978852..66981614(+)


>ENSPTRG00000007228
ATGGCCTCTGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATTCTGCACGACGATGAGGTGACAGTCACGGAGGATAA
GATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAACCTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAACG
TCAACATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCT
GCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGA
CATGGGCTTTGGTCTTTTTGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 204 .04 RPM
SRP007412_cerebellum 41 .48 RPM
SRP007412_heart 64 .82 RPM
SRP007412_kidney 196 .53 RPM
SRP007412_liver 115 .09 RPM
SRP007412_testis 7 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018320 ortholog_one2many 4 retrogenes
retro_btau_1131, retro_btau_1717, retro_btau_186, retro_btau_615,
Callithrix jacchus ENSCJAG00000032919 ortholog_one2many 19 retrogenes
retro_cjac_1125, retro_cjac_1150, retro_cjac_1222, retro_cjac_1375, retro_cjac_1413, retro_cjac_1666, retro_cjac_1809, retro_cjac_183, retro_cjac_2090, retro_cjac_2626, retro_cjac_267, retro_cjac_2765, retro_cjac_306, retro_cjac_3131, retro_cjac_458, retro_cjac_469, retro_cjac_694, retro_cjac_750, retro_cjac_984,
Equus caballus ENSECAG00000008542 possible_ortholog 4 retrogenes
retro_ecab_380, retro_ecab_677, retro_ecab_820, retro_ecab_958,
Latimeria chalumnae ENSLACG00000012630 ortholog_many2many 1 retrogene
retro_lcha_7,
Macropus eugenii ENSMEUG00000015277 possible_ortholog 6 retrogenes
retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Myotis lucifugus ENSMLUG00000010542 possible_ortholog 33 retrogenes
retro_mluc_10, retro_mluc_1064, retro_mluc_1122, retro_mluc_1234, retro_mluc_136, retro_mluc_1374, retro_mluc_1412, retro_mluc_1424, retro_mluc_1654, retro_mluc_1670, retro_mluc_1751, retro_mluc_1810, retro_mluc_1832, retro_mluc_1850, retro_mluc_1944, retro_mluc_197, retro_mluc_2025, retro_mluc_2255, retro_mluc_2265, retro_mluc_2294, retro_mluc_2489, retro_mluc_2578, retro_mluc_433, retro_mluc_472, retro_mluc_570, retro_mluc_577, retro_mluc_61, retro_mluc_732, retro_mluc_791, retro_mluc_858, retro_mluc_916, retro_mluc_945, retro_mluc_95,
Macaca mulatta ENSMMUG00000014888 ortholog_one2one 7 retrogenes
retro_mmul_111, retro_mmul_2194, retro_mmul_2282, retro_mmul_257, retro_mmul_260, retro_mmul_461, retro_mmul_60,
Monodelphis domestica ENSMODG00000009209 possible_ortholog 1 retrogene
retro_mdom_1022,
Mustela putorius furo ENSMPUG00000000204 ortholog_one2many 13 retrogenes
retro_mputfur_1018, retro_mputfur_113, retro_mputfur_122, retro_mputfur_1265, retro_mputfur_129, retro_mputfur_1334, retro_mputfur_1450, retro_mputfur_1598, retro_mputfur_1613, retro_mputfur_304, retro_mputfur_628, retro_mputfur_635, retro_mputfur_709,
Mus musculus ENSMUSG00000007892 possible_ortholog 6 retrogenes
retro_mmus_180, retro_mmus_206, retro_mmus_2060, retro_mmus_2180, retro_mmus_247, retro_mmus_2525,
Oryctolagus cuniculus ENSOCUG00000015087 possible_ortholog 8 retrogenes
retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Otolemur garnettii ENSOGAG00000029641 ortholog_one2many 19 retrogenes
retro_ogar_1078, retro_ogar_1259, retro_ogar_1363, retro_ogar_1430, retro_ogar_1670, retro_ogar_2215, retro_ogar_2413, retro_ogar_2603, retro_ogar_2683, retro_ogar_2942, retro_ogar_3053, retro_ogar_3222, retro_ogar_3393, retro_ogar_363, retro_ogar_474, retro_ogar_500, retro_ogar_574, retro_ogar_607, retro_ogar_961,
Ochotona princeps ENSOPRG00000001163 possible_ortholog 11 retrogenes
retro_opri_1010, retro_opri_130, retro_opri_214, retro_opri_245, retro_opri_38, retro_opri_530, retro_opri_645, retro_opri_768, retro_opri_784, retro_opri_96, retro_opri_972,
Procavia capensis ENSPCAG00000014595 ortholog_one2many 7 retrogenes
retro_pcap_107, retro_pcap_118, retro_pcap_124, retro_pcap_315, retro_pcap_32, retro_pcap_36, retro_pcap_83,
Rattus norvegicus ENSRNOG00000011955 possible_ortholog 6 retrogenes
retro_rnor_1042, retro_rnor_1402, retro_rnor_1827, retro_rnor_2175, retro_rnor_2678, retro_rnor_493,
Rattus norvegicus ENSRNOG00000013874 possible_ortholog 3 retrogenes
retro_rnor_2432, retro_rnor_2700, retro_rnor_2934,
Sarcophilus harrisii ENSSHAG00000014818 possible_ortholog 6 retrogenes
retro_shar_182, retro_shar_234, retro_shar_449, retro_shar_550, retro_shar_614, retro_shar_742,
Ictidomys tridecemlineatus ENSSTOG00000027893 ortholog_one2many 8 retrogenes
retro_itri_1589, retro_itri_1698, retro_itri_1842, retro_itri_1856, retro_itri_226, retro_itri_409, retro_itri_796, retro_itri_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_96 100.00 100.00
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Download FASTA sequences of all ENSPTRG00000007228 retrocopies