RetrogeneDB ID:

retro_shar_550

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL849896.1:395687..395883(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPLP1
Ensembl ID:ENSSHAG00000014818
Aliases:None
Description:ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]


Retrocopy-Parental alignment summary:






>retro_shar_550
TGCCTCTACTCTGCCCTCATCCTTCACTATGATGAGGTTATGGTCATGGAGGATAAAATTAATGCCCTCATTAAAGCAGC
AGGTGTAAATGTTGAACCATTCTGGCCTGGATTATTTGCAAATGCCCTGAACAATGTAAAACATTGGAAGTCTCATCTGC
CTTGTAGGAACTGGTGGATCTGCCCCAGCAGCTGGT

ORF - retro_shar_550 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.27 %
Parental protein coverage: 57.02 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalCIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANI-DIGSLICNIGVGGAPPPAG
C.YSALILH.DEV.V.EDKINALIKAAGVNVEPFWPGLFA.AL.N...IGSLIC..G.GG..P.AG
RetrocopyCLYSALILHYDEVMVMEDKINALIKAAGVNVEPFWPGLFANALNNV>NIGSLICLVGTGGSAPAAG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sarcophilus harrisii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Sarcophilus harrisii was not studied using ChIP-Seq data.