Parental gene: | DKFZP469O2326, ENSPPYG00000018790 |
| Aliases: | DKFZP469O2326, PABPC1 |
| Description: | polyadenylate-binding protein 1 [Source:RefSeq peptide;Acc:NP_001128842] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 8:107226230..107244779(-) |
>ENSPPYG00000018790
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAA
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCGCTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGA
CAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTCGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGCTATGGATTTGTACACTTTGAGACGCAGGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGA
ATGCTCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCTAGGGC
AAAAGAATTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGGCCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCTGTGGATGAGATGAACGGAAAGGAGCTCAACGGAAAACAAATTTACGTTGGTCGAGCTCA
GAAAAAGGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTG
TTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCAC
TAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTA
TCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAG
CGTGTTGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGCTGCAGCTGCTGCAGCTACTCCTGCTGTCCGCAC
CGTTCCACAGTATAAATATGCTGCAGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAATGCAAC
AGCCTGCTGTTCATGTACAAGGTCAGGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGA
GATTGATAATTCAGAACTTCTTCATATGCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACCGGTGTTCCAACTGTTTAA
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAA
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCGCTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGA
CAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTCGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGCTATGGATTTGTACACTTTGAGACGCAGGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGA
ATGCTCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCTAGGGC
AAAAGAATTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGGCCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCTGTGGATGAGATGAACGGAAAGGAGCTCAACGGAAAACAAATTTACGTTGGTCGAGCTCA
GAAAAAGGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAGCAAGATAGGATCACCAGATACCAGGGTG
TTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCAC
TAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCCTGTAATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTA
TCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAG
CGTGTTGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGCTGCAGCTGCTGCAGCTACTCCTGCTGTCCGCAC
CGTTCCACAGTATAAATATGCTGCAGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAATGCAAC
AGCCTGCTGTTCATGTACAAGGTCAGGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGA
GATTGATAATTCAGAACTTCTTCATATGCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACCGGTGTTCCAACTGTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 66 .46 RPM |
| SRP007412_cerebellum | 77 .34 RPM |
| SRP007412_heart | 75 .41 RPM |
| SRP007412_kidney | 161 .86 RPM |
| SRP007412_liver | 196 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000000348 | possible_ortholog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000008178 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015833 | possible_ortholog | 5 retrogenes | |
| Cavia porcellus | ENSCPOG00000012917 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000008718 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000001874 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000070756 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006785 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012245 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017786 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000006222 | ortholog_many2many | 4 retrogenes | |
| Mus musculus | ENSMUSG00000022283 | possible_ortholog | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003142 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000004354 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001506 | within_species_paralog | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000016640 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000008639 | possible_ortholog | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000011267 | ortholog_many2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000006063 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000016395 | ortholog_one2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000004229 | possible_ortholog | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004689 | possible_ortholog | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000003865 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_68 | 94.02 | 99.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_854 | 91.21 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2373 | 87.09 | 89.47 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000018790 retrocopies