Parental gene: | LIN28A, ENSPPYG00000001684 |
| Aliases: | None |
| Description: | lin-28 homolog A (C. elegans) [Source:HGNC Symbol;Acc:15986] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 1:203944454..203959633(-) |
>ENSPPYG00000001684
ATGGGCTCCGTGTCCAACCAGCAGTTTGCAGGTGGCTGCGCCAAGGCGGCAGAAGAGGCGCCCGAGGAGGCGCCGGAGGA
CGCGGCCCGGGCGGCGGACGAGCCTCAGCTGCTGCACGGTGCGGGCATCTGTAAGTGGTTCAACGTGCGCATGGGGTTCG
GCTTCCTGTCCATGACCGCCCGCGCCGGGGTCGCCCTCGACCCCCCAGTGGACGTCTTTGTGCACCAGAGTAAGCTGCAC
ATGGAGGGGTTCCGGAGCTTGAAGGAGGGTGAGGCAGTGGAGTTCACCTTTAAGAAGTCAGCCAAGGGTCTGGAATCCAT
CCGTGTCACCGGACCTGGTGGAGTATTCTGTATCGGGAGTGAGAGGCGGCCAAAAGGGAAGAACATGCAGAAGCGCAGAT
CAAAAGGAGACAGGTGCTACAACTGTGGAGGTCTAGACCATCATGCCAAGGAATGCAAGCTGCCACCCCAGCCCAAGAAG
TGCCACTTCTGCCAGAGCATCAGCCATATGGTAGCCTCATGTCCGCTGAAGGCCCAGCAGGGCCCTAGTGCACAGGGAAA
GCCAACCTACTTTCGGGAGGAAGAAGAAGAAATCCACAGCCCTGCCCTGCTCCCAGAGGCGCAGAATTGA
ATGGGCTCCGTGTCCAACCAGCAGTTTGCAGGTGGCTGCGCCAAGGCGGCAGAAGAGGCGCCCGAGGAGGCGCCGGAGGA
CGCGGCCCGGGCGGCGGACGAGCCTCAGCTGCTGCACGGTGCGGGCATCTGTAAGTGGTTCAACGTGCGCATGGGGTTCG
GCTTCCTGTCCATGACCGCCCGCGCCGGGGTCGCCCTCGACCCCCCAGTGGACGTCTTTGTGCACCAGAGTAAGCTGCAC
ATGGAGGGGTTCCGGAGCTTGAAGGAGGGTGAGGCAGTGGAGTTCACCTTTAAGAAGTCAGCCAAGGGTCTGGAATCCAT
CCGTGTCACCGGACCTGGTGGAGTATTCTGTATCGGGAGTGAGAGGCGGCCAAAAGGGAAGAACATGCAGAAGCGCAGAT
CAAAAGGAGACAGGTGCTACAACTGTGGAGGTCTAGACCATCATGCCAAGGAATGCAAGCTGCCACCCCAGCCCAAGAAG
TGCCACTTCTGCCAGAGCATCAGCCATATGGTAGCCTCATGTCCGCTGAAGGCCCAGCAGGGCCCTAGTGCACAGGGAAA
GCCAACCTACTTTCGGGAGGAAGAAGAAGAAATCCACAGCCCTGCCCTGCTCCCAGAGGCGCAGAATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010582 | ortholog_one2many | 2 retrogenes | |
| Bos taurus | ENSBTAG00000040497 | ortholog_one2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000012488 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009796 | ortholog_one2many | 5 retrogenes | |
| Cavia porcellus | ENSCPOG00000019646 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010710 | ortholog_one2one | 5 retrogenes | |
| Equus caballus | ENSECAG00000020267 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000131914 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000024918 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010158 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009294 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000299 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003971 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000000384 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000017267 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000038409 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000003557 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000004329 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000005678 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1801 | 80.00 | 97.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2067 | 82.47 | 73.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2849 | 93.30 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000001684 retrocopies