Parental gene:

ENSOCUG00000022143

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:33240087..33254598(+)


>ENSOCUG00000022143
ATGGTTATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAATTTGTGAGACAGTATTACACACTGTTGAACCAAGCCCC
AGACATGCTACACAGATTTTATGGAAAGAACTCTTCTTACGTCCATGGGGGATTGGATTCAAATGGCAAGCCAGCGGATG
CAGTTTATGGACAGAAAGAAATCCATAGGAAGGTGATGTCACAGAACTTCACCAATTGCCACACCAAGATTCGCCATGTT
GATGCTCATGCTACTCTGAATGATGGTGTGGTGGTCCAGGTGATGGGACTGCTCTCCAATAATAACCAGGCTTTGAGGAG
ATTCATGCAGACATTTGTCCTTGCTCCTGAGGGTTCTGTTGCAAATAAATTCTATGTTCACAATGATATCTTCAGATACC
AAGATGAGGTCTTTGGTGGCTTTGTCACTGAGCCTCAGGAGGAATCTGAGGAAGAAGTAGAGGAACCTGAGGAAAGGCAG
CAGACACCTGAAGTGGTACCTGATGATTCAGGAACTTTCTATGACCAGACTGTCAGTATCAGTAATTTCATTACCACACA
TTTGACGTTTTTGTTCTGTTGTGTGAGGATTTCTTGTGAAAGCAATGACTTGGAAGAACACCTATCTGAAATCCAAGAGG
AAAAGCCCGAGCCAGTATTAGAAGAAGCTACTCCTGAAGATGCTCAGAAGAGTTCTTCTCCAGCACCTGCAGACATAGCT
CAGACAGCACAGGAAGACTTGAGGACATTTTCTTGGGCATCTGTGACCAGTAAGAACCTTCCACCCAGTGGAGCTGTTCC
AGTTACTGGGATACCACCTCATGTTGTTAAAGTTCCAGCTTCACAAGTAAGAGTTTATAAACACTTGCACTCAGAATTTA
ATTATACAGAGGTTTTGAGAAGGTGGGAATTGGNCCTCCCCAGAGGCCCCAGGCCAGTTCGTGAGCCTGGAGAGCAAGGT
GATGTTGAACCCCGAAGAATTGTGAGACACCCTGACAGTCACCAGCTCTTCATTGGCAATCTGCCTCATGAGGTGGACAA
ATCGGAACTGAAAGATTTCTTTCAAAATTATGGGAATGTGGTGGAGTTGCGCATCAACAGTGGTGGAAAGCTGCCCAATT
TTGGTTTTGTTGTATTTGATGATTCTGAGCCTGTTCAGAAGGTCCTTAGCAACAGGCCCATCATGTTCAGAGGTGAAGTC
CGTCTGAATGTGGAAGAGAAGAAGACTCGAGCTGCTAGGGAGGGAGATCGTCGCGATAACCGCCTGCGGGGACCTGGAGG
CCCTCGAGGTGGGCTGGGTGGTGGAATGCGAGGCCCTCCCCGTGGAGGCATGGTGCAGAAACCCGGATTCGGAGTGGGAA
GGGGGATTGCTCCACGGCAATGA

Library Parental gene expression (RPM)
SRP017611_liver 14 .03 RPM
SRP017611_kidney 18 .04 RPM
SRP017611_brain 6 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006626 ortholog_one2many 2 retrogenes
retro_cpor_1119, retro_cpor_464,
Dasypus novemcinctus ENSDNOG00000018758 possible_ortholog 3 retrogenes
retro_dnov_1492, retro_dnov_1632, retro_dnov_526,
Echinops telfairi ENSETEG00000017447 possible_ortholog 1 retrogene
retro_etel_1488,
Homo sapiens ENSG00000145907 possible_ortholog 1 retrogene
retro_hsap_2322,
Microcebus murinus ENSMICG00000012235 possible_ortholog 2 retrogenes
retro_mmur_1247, retro_mmur_1469,
Mustela putorius furo ENSMPUG00000013661 possible_ortholog 1 retrogene
retro_mputfur_625,
Mus musculus ENSMUSG00000018583 ortholog_one2one 3 retrogenes
retro_mmus_1389, retro_mmus_3229, retro_mmus_3688,
Nomascus leucogenys ENSNLEG00000016470 ortholog_one2one 1 retrogene
retro_nleu_1814,
Otolemur garnettii ENSOGAG00000001726 possible_ortholog 2 retrogenes
retro_ogar_3156, retro_ogar_3183,
Pongo abelii ENSPPYG00000015968 possible_ortholog 1 retrogene
retro_pabe_2104,
Pan troglodytes ENSPTRG00000017438 possible_ortholog 1 retrogene
retro_ptro_1696,
Pteropus vampyrus ENSPVAG00000017250 possible_ortholog 2 retrogenes
retro_pvam_1188, retro_pvam_188,
Rattus norvegicus ENSRNOG00000013186 ortholog_one2many 1 retrogene
retro_rnor_1282,
Tupaia belangeri ENSTBEG00000004386 possible_ortholog 12 retrogenes
retro_tbel_2177, retro_tbel_2295, retro_tbel_2296, retro_tbel_2327, retro_tbel_2352, retro_tbel_2460, retro_tbel_2461, retro_tbel_3889, retro_tbel_3928, retro_tbel_4180, retro_tbel_4190, retro_tbel_4246,
Tarsius syrichta ENSTSYG00000004570 possible_ortholog 1 retrogene
retro_tsyr_1391,
Tursiops truncatus ENSTTRG00000009072 possible_ortholog 1 retrogene
retro_ttru_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1352 59.64 59.13
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Download FASTA sequences of all ENSOCUG00000022143 retrocopies