RetrogeneDB ID:

retro_etel_1488

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_273572:2421..3218(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:G3BP1
Ensembl ID:ENSETEG00000017447
Aliases:None
Description:GTPase activating protein (SH3 domain) binding protein 1 [Source:HGNC Symbol;Acc:30292]


Retrocopy-Parental alignment summary:






>retro_etel_1488
TATGGAAAGAACTCTTCTTATGTCCATGGTGGCTTGGATTCAAATGGAAAACCAGCAGATGCTGTCTATGGACAAAAGGA
AATCCATAGGAAAGTTATGTCTCAAAACTTTACTAACTGCCACACTAAGATTCGCCATGTTGATGCTCATGCTACTCTCA
ATGATGGTGTGGTGTCCAGGTGATGGGACTGCTGTCTAATAACAACCAGGCTCGGAGGAGATTCATGCAGACATTTGTCC
TTGCTCCTGAGGGCTCTGTTGCAAATACATTCTATGTTCACAATGATATCTTCAGATATCAAGATGAAGTTTTTGGTGGC
TTTGTCACCGAGCCTCAAGCGGAATCTGAAGAAGAAGTAGAGGAGCCTGAACAAAGACAGCAGACACCAGAGGTGGTACC
TGATGATGCTGGAGCATTTTATGAGCAGACTGTCAGCAATGACTTAGAGGAACATTTAGAGGAACCAGTTGCTGAACCAG
AGCCTGATCCTGAACCAGAACCAGAGCAAGAGCCCGTACCTGAAATCCAGGAGGAAAAATCTGAGCTTGCCTTAGAAGAA
ACTGCTCCTGAGGATGCTCAGAAGAGTCGTGTCGCGCCCCCCACCCCCCGCCCCTGCAGATGGGGCGCAGATGGGGCTCA
GACGGTGCAGGAAGACTTGAGGACATTTTCTTGGGCATCTGTGACCAGTAAGAACCTTCCACCCAGTGGAGCTGTTCCAG
TTACTGGGATTCCACCTCATGTTGTCAAAGTCCCAGCTTCACAGCCCCGACCTGAGTCTAAGCCTGAATCTCAGATA

ORF - retro_etel_1488 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.65 %
Parental protein coverage: 59.58 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalYGKNSSYVPGGLESNGKTADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVV-VQVMGLLSNNN
YGKNSSYV.GGL.SNGK.ADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVV.VQVMGLLSNNN
RetrocopyYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVV<VQVMGLLSNNN
ParentalQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVDEPEERQQTPEVVPDDSGA
QA.RRFMQTFVLAPEGSVAN.FYVHNDIFRYQDEVFGGFVTEPQ.ESEEEV.EPE.RQQTPEVVPDD.GA
RetrocopyQARRRFMQTFVLAPEGSVANTFYVHNDIFRYQDEVFGGFVTEPQAESEEEVEEPEQRQQTPEVVPDDAGA
ParentalFYDQTVSND----LEEHLEEPVAEPEPDPE----PEPEQEPVPEIQEEKSEPALEETAPEDAQKSSSPAP
FY.QTVSND....LEE...EP...PEP.PE....PE...E......EE......................
RetrocopyFYEQTVSNDLEEHLEEPVAEPEPDPEPEPEQEPVPEIQEEKSELALEETAPEDAQKSRVAXXXXXXCRWG
ParentalADGAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQI
ADGAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQI
RetrocopyADGAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQI