Parental gene:

ENSOCUG00000017386

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:113845451..113852062(-)


>ENSOCUG00000017386
ATGGTGGCCGCCAAGAAGACGAAAAAGTCGCTGGAGTCGATCAACTCTAGGCTCCAGCTTGTGATGAAGAGCGGAAAATA
CGTGCTGGGGTACAAGCAGTCTCTGAAGATGATCAGGCAAGGCAAGGCGAAGCTGGTCATCCTCGCCAACAACTGCCCGG
CCCTGAGGAAATCTGAAATAGAGTATTACGCCATGTTGGCCAAAACTGGTGTCCATCACTACAGTGGCAATAATATTGAA
CTGGGCACAGCTTGTGGAAAATACTACAGAGTATGCACGCTTTCTATCATTGATCCAGGCGATTCTGATATTATTAGAAG
CATGCCAGAACAGACTGGTGAAAAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 52 .64 RPM
SRP017611_kidney 100 .75 RPM
SRP017611_brain 55 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016047 ortholog_many2many 2 retrogenes
Ailuropoda melanoleuca ENSAMEG00000000605 possible_ortholog 18 retrogenes
Bos taurus ENSBTAG00000016278 possible_ortholog 2 retrogenes
Callithrix jacchus ENSCJAG00000015549 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000026030 possible_ortholog 4 retrogenes
Dasypus novemcinctus ENSDNOG00000013828 possible_ortholog 12 retrogenes
Dipodomys ordii ENSDORG00000012383 possible_ortholog 10 retrogenes
Equus caballus ENSECAG00000021705 possible_ortholog 7 retrogenes
Erinaceus europaeus ENSEEUG00000000964 possible_ortholog 9 retrogenes
Felis catus ENSFCAG00000002165 possible_ortholog 9 retrogenes
Homo sapiens ENSG00000156482 possible_ortholog 9 retrogenes
Gorilla gorilla ENSGGOG00000005502 ortholog_one2many 9 retrogenes
Loxodonta africana ENSLAFG00000002077 ortholog_one2many 2 retrogenes
Microcebus murinus ENSMICG00000004620 possible_ortholog 3 retrogenes
Myotis lucifugus ENSMLUG00000003637 possible_ortholog 11 retrogenes
Macaca mulatta ENSMMUG00000020073 possible_ortholog 12 retrogenes
Monodelphis domestica ENSMODG00000006804 possible_ortholog 1 retrogene
Mus musculus ENSMUSG00000058600 ortholog_one2many 21 retrogenes
Ochotona princeps ENSOPRG00000007644 possible_ortholog 3 retrogenes
Pongo abelii ENSPPYG00000018774 ortholog_one2many 4 retrogenes
Pan troglodytes ENSPTRG00000020454 possible_ortholog 10 retrogenes
Pteropus vampyrus ENSPVAG00000014461 possible_ortholog 9 retrogenes
Rattus norvegicus ENSRNOG00000005975 possible_ortholog 19 retrogenes
Sus scrofa ENSSSCG00000006081 ortholog_one2many 6 retrogenes
Tursiops truncatus ENSTTRG00000016058 possible_ortholog 5 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_178 99.13 100.00
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2. retro_ocun_279 75.22 98.26
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3. retro_ocun_1447 74.55 95.65
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4. retro_ocun_1580 68.70 99.13
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Download FASTA sequences of all ENSOCUG00000017386 retrocopies