Parental gene: | Rpl30, ENSMUSG00000058600 |
| Aliases: | None |
| Description: | ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:98037] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 15:34440504..34443640(-) |
>ENSMUSG00000058600
ATGGTGGCCGCAAAGAAGACGAAAAAGTCTCTGGAGTCGATCAACTCTAGGCTCCAACTTGTTATGAAAAGTGGGAAGTA
CGTGCTGGGCTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAGTTGGTTATCCTTGCCAACAACTGTCCAG
CTTTGAGGAAATCTGAAATAGAGTACTATGCCATGTTGGCTAAAACTGGGGTCCATCACTACAGTGGCAATAATATTGAA
CTGGGCACAGCGTGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGACCCAGGTGATTCTGATATTATTAGAAG
CATGCCAGAACAGACTGGTGAGAAGTAA
ATGGTGGCCGCAAAGAAGACGAAAAAGTCTCTGGAGTCGATCAACTCTAGGCTCCAACTTGTTATGAAAAGTGGGAAGTA
CGTGCTGGGCTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAGTTGGTTATCCTTGCCAACAACTGTCCAG
CTTTGAGGAAATCTGAAATAGAGTACTATGCCATGTTGGCTAAAACTGGGGTCCATCACTACAGTGGCAATAATATTGAA
CTGGGCACAGCGTGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGACCCAGGTGATTCTGATATTATTAGAAG
CATGCCAGAACAGACTGGTGAGAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 46 .73 RPM |
| SRP007412_cerebellum | 28 .92 RPM |
| SRP007412_heart | 78 .98 RPM |
| SRP007412_kidney | 55 .54 RPM |
| SRP007412_liver | 64 .39 RPM |
| SRP007412_testis | 49 .99 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000016047 | ortholog_one2many | 2 retrogenes | |
| Ailuropoda melanoleuca | ENSAMEG00000000605 | possible_ortholog | 18 retrogenes | |
| Bos taurus | ENSBTAG00000016278 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000015549 | possible_ortholog | 4 retrogenes | |
| Felis catus | ENSFCAG00000002165 | possible_ortholog | 9 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005502 | ortholog_one2one | 9 retrogenes | |
| Loxodonta africana | ENSLAFG00000002077 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000004620 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000020073 | possible_ortholog | 12 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017386 | ortholog_one2many | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000018774 | ortholog_one2one | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000006081 | ortholog_one2one | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_342 | 84.35 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_569 | 93.04 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_789 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_892 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_1048 | 93.04 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmus_1102 | 83.48 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_mmus_1276 | 63.00 | 84.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_mmus_1434 | 95.69 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_mmus_1439 | 91.30 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_mmus_1586 | 61.82 | 92.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_mmus_2059 | 95.65 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_mmus_2273 | 95.65 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_mmus_2728 | 99.13 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_mmus_2828 | 90.48 | 72.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_mmus_3179 | 87.93 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_mmus_3286 | 61.61 | 96.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_mmus_3465 | 98.26 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_mmus_3573 | 95.54 | 97.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 19. | retro_mmus_3583 | 79.28 | 96.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 20. | retro_mmus_3681 | 99.13 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 21. | retro_mmus_3691 | 99.13 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000058600 retrocopies