Parental gene: | PBDC1, ENSOCUG00000001088 |
| Aliases: | None |
| Description: | polysaccharide biosynthesis domain containing 1 [Source:HGNC Symbol;Acc:28790] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | X:68755759..68761584(+) |
>ENSOCUG00000001088
ATGGAGGCTAGTAGTGGAACCGATGAACCGGTTTCCGGGGAGCTGGCGTCCGTGGCACACGCTCTTTCTCTCCCAGCAGA
GTCTTATGGCAACGATCCAGATATTGAAATGGCCTGGGCCGCAAGAGCGATGCAGCATGCTGAAGTGTATTACAAGCTGA
TTTCATCAGTTGACCCACAGTTCCTGAAACTCACCAAAGTGGATGACCAAATCTACTCTGAATTCCGAAAAATTTTTGAG
AAGCTCAAGATAGATGTGTTAGATCCAGAAGAACTCAAATCAGAATCGGCAAAAGAGACGTGGAGGCCGTTCTGCCTGAA
GTTTGAAGGGATCGTGGAAGACTTCAACTATGGTACTTTGCTGCGACTAGATTGTTCTCAGGGTTACACTGAGGAAAACA
CCATCTTCGCCCCCAGAATACAGTTTTTGGCCATTGAAATCGCTCGGAACCGGGAAGGCTATAACAAAGCAGTTTACGTC
GGTGCTCAGCACAAAGAAGGAGAGAGAGCAGGTGTCAGTGGAGCAGAGCAAGAGAAACCCGAGAAAAAAGAAGAGGAAGG
AGCCAACAGTGGAGGGAAAAAAGAGGAGGGAGTTGCCGGAGAAGGAGAAAAAGAGGAAAAGGCCAAAGAAGGAGAAAAAG
AGAAAGAAGCCGACAAAGGAATCTGA
ATGGAGGCTAGTAGTGGAACCGATGAACCGGTTTCCGGGGAGCTGGCGTCCGTGGCACACGCTCTTTCTCTCCCAGCAGA
GTCTTATGGCAACGATCCAGATATTGAAATGGCCTGGGCCGCAAGAGCGATGCAGCATGCTGAAGTGTATTACAAGCTGA
TTTCATCAGTTGACCCACAGTTCCTGAAACTCACCAAAGTGGATGACCAAATCTACTCTGAATTCCGAAAAATTTTTGAG
AAGCTCAAGATAGATGTGTTAGATCCAGAAGAACTCAAATCAGAATCGGCAAAAGAGACGTGGAGGCCGTTCTGCCTGAA
GTTTGAAGGGATCGTGGAAGACTTCAACTATGGTACTTTGCTGCGACTAGATTGTTCTCAGGGTTACACTGAGGAAAACA
CCATCTTCGCCCCCAGAATACAGTTTTTGGCCATTGAAATCGCTCGGAACCGGGAAGGCTATAACAAAGCAGTTTACGTC
GGTGCTCAGCACAAAGAAGGAGAGAGAGCAGGTGTCAGTGGAGCAGAGCAAGAGAAACCCGAGAAAAAAGAAGAGGAAGG
AGCCAACAGTGGAGGGAAAAAAGAGGAGGGAGTTGCCGGAGAAGGAGAAAAAGAGGAAAAGGCCAAAGAAGGAGAAAAAG
AGAAAGAAGCCGACAAAGGAATCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 2 .24 RPM |
| SRP017611_kidney | 4 .16 RPM |
| SRP017611_brain | 6 .46 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000017228 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018571 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000009882 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000001116 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000009685 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000031226 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015205 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000002662 | ortholog_one2one | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017872 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000003411 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_595 | 76.21 | 91.40 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1017 | 63.31 | 60.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1402 | 73.48 | 59.73 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000001088 retrocopies