RetrogeneDB ID: retro_ogar_3063

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873708.1:928423..928879(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000015205
• Aliases: None
• Description: None

Sequence

>retro_ogar_3063
CCGGATATTGAGATGGCTTGGGCCATGAGAGCAATGCAACATGCTGAAGTCTATTACTAGCTGATTTCATCGGTTGACCC
ACAATTCCTGAAACTCACCAAAGTGGATGACCAGATCTATTCTGAATTCCGGGAAAATTTTGAGAAACTCAGGATAGATA
TCTTAGACCCAGAAGAACTCAAATCAGAATCAGCTAAAGAGAAACGGAGGCCATTCTGCTTGAAGTTTGATGGGATCGTA
GAAGATTTCAACTATGGTACTTTGCTGCGACTAGACTGTTCTCAGGGCTACACTGAGGAAAACACCATCTTTGCCCCCAG
GATACAATTTTTTGCTATTGAAATTGCTCGGAACCGGGAAGGCTGTAACAAAGCAGTTTCCATCAGTGTTCAGGACAAAG
AAAGAGAGAATGAAGCCAACAATGGAGGAGAGAAAGGAGCTGACCGTGGAGGAAGA

Alignment

ORF - retro_ogar_3063 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.39 %
• Parental protein coverage: 79.58 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PDIEMAWAMRAMQHAEVYYKLISSVDPQFLKLTKVDDQIYSEFRENFEKLRIDILDPEELKSESAKEKWR
          PDIEMAWAMRAMQHAEVYY.LISSVDPQFLKLTKVDDQIYSEFRENFEKLRIDILDPEELKSESAKEK.R
Retrocopy PDIEMAWAMRAMQHAEVYY*LISSVDPQFLKLTKVDDQIYSEFRENFEKLRIDILDPEELKSESAKEKRR

Parental  PFCLKFDGIVEDFNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNREGYNKAVSISVQDKEGENEAN
          PFCLKFDGIVEDFNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNREG.NKAVSISVQDKE.ENEAN
Retrocopy PFCLKFDGIVEDFNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNREGCNKAVSISVQDKERENEAN

Parental  NGGEKGVDSGGK
          NGGEKG.D.GG.
Retrocopy NGGEKGADRGGR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3063 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017228	2 retrocopies	retro_cfam_1588, retro_cfam_944,
Callithrix jacchus	ENSCJAG00000018571	1 retrocopy	retro_cjac_1880,
Equus caballus	ENSECAG00000009882	1 retrocopy	retro_ecab_532,
Erinaceus europaeus	ENSEEUG00000001116	1 retrocopy	retro_eeur_377,
Monodelphis domestica	ENSMODG00000009685	2 retrocopies	retro_mdom_1002, retro_mdom_572,
Mus musculus	ENSMUSG00000031226	1 retrocopy	retro_mmus_1569,
Oryctolagus cuniculus	ENSOCUG00000001088	3 retrocopies	retro_ocun_1017, retro_ocun_1402, retro_ocun_595,
Otolemur garnettii	ENSOGAG00000015205	1 retrocopy	retro_ogar_3063 ,
Rattus norvegicus	ENSRNOG00000002662	3 retrocopies	retro_rnor_1703, retro_rnor_1705, retro_rnor_826,
Sarcophilus harrisii	ENSSHAG00000017872	1 retrocopy	retro_shar_132,
Tupaia belangeri	ENSTBEG00000003411	3 retrocopies	retro_tbel_3448, retro_tbel_494, retro_tbel_979,